(122 nodes) Nuclear body network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K3Y674_SETIT	Uncharacterized protein. (567 aa)
	A0A0Q3PTF7	RRM domain-containing protein. (202 aa)
	A0A0Q3RQ09	Uncharacterized protein. (57 aa)
	A0A368PGP8	PPIase cyclophilin-type domain-containing protein. (829 aa)
	A0A368PIM3	C2H2-type domain-containing protein. (706 aa)
	A0A368PK73	Uncharacterized protein. (825 aa)
	A0A368PN48	Uncharacterized protein. (324 aa)
	A0A368PN78	Photolyase/cryptochrome alpha/beta domain-containing protein. (706 aa)
	A0A368PXF5	Uncharacterized protein. (118 aa)
	A0A368PYL1	Uncharacterized protein. (640 aa)
	A0A368PYU0	Uncharacterized protein. (600 aa)
	A0A368Q4I5	RRM domain-containing protein. (422 aa)
	A0A368Q5B9	Endo/exonuclease/phosphatase domain-containing protein. (260 aa)
	A0A368QBC5	Uncharacterized protein. (314 aa)
	A0A368QC93	Fibronectin type-III domain-containing protein. (597 aa)
	A0A368QIK0	Uncharacterized protein. (954 aa)
	A0A368QIY2	SBP-type domain-containing protein. (859 aa)
	A0A368QL71	Coilin_N domain-containing protein. (676 aa)
	A0A368QME4	Fibronectin type-III domain-containing protein. (696 aa)
	A0A368QPF6	Uncharacterized protein. (849 aa)
	A0A368QUJ5	Photolyase/cryptochrome alpha/beta domain-containing protein. (611 aa)
	A0A368QUK3	Uncharacterized protein. (233 aa)
	A0A368R077	Uncharacterized protein. (348 aa)
	A0A368RAV0	Uncharacterized protein. (183 aa)
	A0A368RUT9	Photolyase/cryptochrome alpha/beta domain-containing protein. (683 aa)
	A0A368S0A9	Uncharacterized protein. (254 aa)
	A0A368SCH2	Uncharacterized protein. (304 aa)
	A0A368SFT4	Uncharacterized protein. (526 aa)
	A0A368SI22	Endo/exonuclease/phosphatase domain-containing protein. (484 aa)
	A0A368SIT3	C2H2-type domain-containing protein. (491 aa)
	A0A368SK56	RRM domain-containing protein. (442 aa)
	A0A368SQC9	Uncharacterized protein. (270 aa)
	A0A368SQJ5	RRM domain-containing protein. (242 aa)
	A0A368SWZ1	RRM domain-containing protein. (200 aa)
	K3XGM8_SETIT	Uncharacterized protein. (517 aa)
	K3XH18_SETIT	Uncharacterized protein. (492 aa)
	K3XI15_SETIT	DUF1767 domain-containing protein. (429 aa)
	K3XKG4_SETIT	Uncharacterized protein. (301 aa)
	K3XKV7_SETIT	Uncharacterized protein. (272 aa)
	K3XKZ0_SETIT	RNA_GG_bind domain-containing protein. (266 aa)
	K3XLG5_SETIT	Uncharacterized protein. (239 aa)
	K3XN20_SETIT	Uncharacterized protein. (138 aa)
	K3XQL9_SETIT	RRM domain-containing protein. (663 aa)
	K3XVA5_SETIT	Uncharacterized protein. (826 aa)
	K3XVI9_SETIT	C2H2-type domain-containing protein. (716 aa)
	K3XVQ7_SETIT	Uncharacterized protein. (665 aa)
	K3XVT1_SETIT	Photolyase/cryptochrome alpha/beta domain-containing protein. (642 aa)
	K3XY01_SETIT	Uncharacterized protein. (345 aa)
	K3XYL9_SETIT	Uncharacterized protein. (290 aa)
	K3XYV4_SETIT	RRM domain-containing protein. (260 aa)
	K3XZ09_SETIT	Matrin-type domain-containing protein. (246 aa)
	K3XZE6_SETIT	RRM domain-containing protein. (204 aa)
	K3XZF0_SETIT	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (201 aa)
	K3XZG9_SETIT	Uncharacterized protein. (191 aa)
	K3XZT4_SETIT	Uncharacterized protein. (146 aa)
	K3Y4X4_SETIT	Uncharacterized protein. (988 aa)
	K3Y8V1_SETIT	Uncharacterized protein. (313 aa)
	K3Y9N5_SETIT	Uncharacterized protein. (247 aa)
	K3YAF9_SETIT	Uncharacterized protein. (163 aa)
	K3YD51_SETIT	Photolyase/cryptochrome alpha/beta domain-containing protein. (676 aa)
	K3YE77_SETIT	Uncharacterized protein. (229 aa)
	K3YGP1_SETIT	Uncharacterized protein. (635 aa)
	K3YIK5_SETIT	RRM domain-containing protein. (326 aa)
	K3YIL8_SETIT	RRM domain-containing protein. (325 aa)
	K3YJB2_SETIT	Uncharacterized protein. (251 aa)
	K3YPL8_SETIT	Uncharacterized protein. (992 aa)
	K3YPW7_SETIT	Uncharacterized protein. (829 aa)
	K3YQ66_SETIT	Uncharacterized protein. (761 aa)
	K3YQG4_SETIT	Uncharacterized protein. (697 aa)
	K3YUM5_SETIT	Uncharacterized protein. (291 aa)
	K3YUS2_SETIT	Uncharacterized protein. (283 aa)
	K3YVP7_SETIT	RRM domain-containing protein. (212 aa)
	K3YW24_SETIT	Uncharacterized protein. (177 aa)
	K3YW51_SETIT	Uncharacterized protein. (172 aa)
	K3Z010_SETIT	C2H2-type domain-containing protein. (680 aa)
	K3Z3C5_SETIT	Uncharacterized protein. (1092 aa)
	K3Z3L4_SETIT	Uncharacterized protein. (931 aa)
	K3Z3P7_SETIT	Importin N-terminal domain-containing protein. (890 aa)
	K3Z462_SETIT	Fibronectin type-III domain-containing protein. (728 aa)
	K3Z5D6_SETIT	SBP-type domain-containing protein. (525 aa)
	K3Z6F1_SETIT	Uncharacterized protein. (427 aa)
	K3Z6U8_SETIT	Fibronectin type-III domain-containing protein. (393 aa)
	K3Z7U0_SETIT	Uncharacterized protein. (334 aa)
	K3Z8A2_SETIT	Uncharacterized protein. (305 aa)
	K3Z8K8_SETIT	Uncharacterized protein. (285 aa)
	K3Z8N7_SETIT	Uncharacterized protein. (279 aa)
	K3Z9R9_SETIT	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (201 aa)
	K3ZC97_SETIT	Coilin_N domain-containing protein. (258 aa)
	K3ZHW1_SETIT	Uncharacterized protein. (573 aa)
	K3ZIA3_SETIT	RING-type domain-containing protein. (479 aa)
	K3ZL71_SETIT	Uncharacterized protein. (623 aa)
	K3ZRF8_SETIT	PPIase cyclophilin-type domain-containing protein. (643 aa)
	K3ZS29_SETIT	Uncharacterized protein. (550 aa)
	K3ZUM6_SETIT	Uncharacterized protein. (355 aa)
	K3ZV09_SETIT	Uncharacterized protein. (336 aa)
	K3ZWB8_SETIT	RRM domain-containing protein. (251 aa)
	K3ZWZ0_SETIT	RRM domain-containing protein. (207 aa)
	K3ZY60_SETIT	KH_dom_type_1 domain-containing protein. (118 aa)
	K3ZYT0_SETIT	Uncharacterized protein. (68 aa)
	K4A0B0_SETIT	Endo/exonuclease/phosphatase domain-containing protein. (288 aa)
	K4A2Q3_SETIT	Uncharacterized protein. (257 aa)
	K4A376_SETIT	RRM domain-containing protein. (398 aa)
	K4A4P9_SETIT	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1933 aa)
	K4A530_SETIT	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. (1131 aa)
	K4A5F1_SETIT	TPR_REGION domain-containing protein. (955 aa)
	K4A925_SETIT	RRM domain-containing protein. (491 aa)
	K4A969_SETIT	Uncharacterized protein. (484 aa)
	K4AA44_SETIT	RRM domain-containing protein. (439 aa)
	K4AAM2_SETIT	Cytochrome b561 and DOMON domain-containing protein. (407 aa)
	K4AC00_SETIT	Uncharacterized protein. (349 aa)
	K4AD21_SETIT	RING-type domain-containing protein. (304 aa)
	K4ADA4_SETIT	RRM domain-containing protein. (293 aa)
	K4ADF6_SETIT	Uncharacterized protein. (285 aa)
	K4ADI2_SETIT	Uncharacterized protein. (282 aa)
	K4ADK8_SETIT	Uncharacterized protein. (277 aa)
	K4AE28_SETIT	Uncharacterized protein. (255 aa)
	K4AEY8_SETIT	RRM domain-containing protein. (218 aa)
	K4AF62_SETIT	RRM domain-containing protein. (208 aa)
	K4AGB2_SETIT	Uncharacterized protein. (147 aa)
	K4AIC5_SETIT	RanBP2-type domain-containing protein. (450 aa)
	K4AL83_SETIT	Endo/exonuclease/phosphatase domain-containing protein. (442 aa)
	K4AMW1_SETIT	Uncharacterized protein. (550 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368PIM3	A0A368QIK0	A0A368PIM3	A0A368QIK0	C2H2-type domain-containing protein.	Uncharacterized protein.	0.616
A0A368PIM3	K3XGM8_SETIT	A0A368PIM3	K3XGM8	C2H2-type domain-containing protein.	Uncharacterized protein.	0.688
A0A368PIM3	K3XKZ0_SETIT	A0A368PIM3	K3XKZ0	C2H2-type domain-containing protein.	RNA_GG_bind domain-containing protein.	0.855
A0A368PIM3	K3Y674_SETIT	A0A368PIM3	K3Y674	C2H2-type domain-containing protein.	Uncharacterized protein.	0.613
A0A368PIM3	K3Z3C5_SETIT	A0A368PIM3	K3Z3C5	C2H2-type domain-containing protein.	Uncharacterized protein.	0.616
A0A368PIM3	K3ZHW1_SETIT	A0A368PIM3	K3ZHW1	C2H2-type domain-containing protein.	Uncharacterized protein.	0.613
A0A368PIM3	K4A4P9_SETIT	A0A368PIM3	K4A4P9	C2H2-type domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.617
A0A368PIM3	K4A5F1_SETIT	A0A368PIM3	K4A5F1	C2H2-type domain-containing protein.	TPR_REGION domain-containing protein.	0.616
A0A368PN48	A0A368SIT3	A0A368PN48	A0A368SIT3	Uncharacterized protein.	C2H2-type domain-containing protein.	0.921
A0A368PN78	A0A368RUT9	A0A368PN78	A0A368RUT9	Photolyase/cryptochrome alpha/beta domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.901
A0A368PN78	K3XVT1_SETIT	A0A368PN78	K3XVT1	Photolyase/cryptochrome alpha/beta domain-containing protein.	Photolyase/cryptochrome alpha/beta domain-containing protein.	0.915
A0A368PN78	K3YQG4_SETIT	A0A368PN78	K3YQG4	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.966
A0A368PN78	K3ZL71_SETIT	A0A368PN78	K3ZL71	Photolyase/cryptochrome alpha/beta domain-containing protein.	Uncharacterized protein.	0.450
A0A368PN78	K4A530_SETIT	A0A368PN78	K4A530	Photolyase/cryptochrome alpha/beta domain-containing protein.	Phytochrome; Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.	0.450
A0A368QBC5	A0A368R077	A0A368QBC5	A0A368R077	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A368QBC5	A0A368SK56	A0A368QBC5	A0A368SK56	Uncharacterized protein.	RRM domain-containing protein.	0.749
A0A368QBC5	A0A368SQJ5	A0A368QBC5	A0A368SQJ5	Uncharacterized protein.	RRM domain-containing protein.	0.817
A0A368QBC5	A0A368SWZ1	A0A368QBC5	A0A368SWZ1	Uncharacterized protein.	RRM domain-containing protein.	0.627
A0A368QBC5	K3XKV7_SETIT	A0A368QBC5	K3XKV7	Uncharacterized protein.	Uncharacterized protein.	0.747
A0A368QBC5	K3XZE6_SETIT	A0A368QBC5	K3XZE6	Uncharacterized protein.	RRM domain-containing protein.	0.596

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