(49 nodes) RNA helicase, DEAD-box type, Q motif network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K3Z4Q8_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (604 aa)
	K3ZG75_SETIT	Uncharacterized protein. (429 aa)
	K3ZGX2_SETIT	Uncharacterized protein. (1346 aa)
	K3ZQZ5_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (754 aa)
	K3ZRE6_SETIT	Uncharacterized protein. (649 aa)
	K4AJ07_SETIT	RNA helicase. (550 aa)
	K4A8Y0_SETIT	Uncharacterized protein. (498 aa)
	K4A725_SETIT	Uncharacterized protein. (629 aa)
	K4A6Y6_SETIT	Uncharacterized protein. (640 aa)
	K4A6T7_SETIT	Uncharacterized protein. (654 aa)
	K4A698_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (744 aa)
	K4A669_SETIT	Uncharacterized protein. (759 aa)
	K4A639_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (768 aa)
	K3ZVP6_SETIT	Uncharacterized protein. (296 aa)
	K3ZSI0_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (507 aa)
	K3ZS55_SETIT	Uncharacterized protein. (540 aa)
	A0A0Q3QWU8	Uncharacterized protein; Belongs to the DEAD box helicase family. (382 aa)
	A0A0Q3RQX1	Q_MOTIF domain-containing protein. (176 aa)
	A0A368PVZ5	Uncharacterized protein. (960 aa)
	A0A368QX02	Uncharacterized protein. (621 aa)
	A0A368RWG6	Uncharacterized protein. (876 aa)
	A0A368RYQ4	Uncharacterized protein; Belongs to the DEAD box helicase family. (501 aa)
	A0A368SAJ2	Uncharacterized protein. (582 aa)
	A0A368SB39	Uncharacterized protein. (1357 aa)
	A0A368SFY3	RNA helicase. (549 aa)
	A0A368SIL9	Uncharacterized protein; Belongs to the DEAD box helicase family. (480 aa)
	K3XEM8_SETIT	Uncharacterized protein. (806 aa)
	K3XFA8_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (668 aa)
	K3XFN8_SETIT	Uncharacterized protein. (617 aa)
	K3XFY3_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (583 aa)
	K3XG22_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (569 aa)
	K3XG42_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (562 aa)
	K3XGQ9_SETIT	Uncharacterized protein. (512 aa)
	K3XH16_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (492 aa)
	K3XV65_SETIT	Uncharacterized protein. (901 aa)
	K3XX85_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (414 aa)
	K3Y5A3_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (798 aa)
	K3YFZ8_SETIT	Uncharacterized protein. (1065 aa)
	K3YG80_SETIT	DEAD-box ATP-dependent RNA helicase 29. (859 aa)
	K3YMJ3_SETIT	Q_MOTIF domain-containing protein. (56 aa)
	K3YMU0_SETIT	Q_MOTIF domain-containing protein. (47 aa)
	K3YPX6_SETIT	Uncharacterized protein. (821 aa)
	K3YQW7_SETIT	Uncharacterized protein. (620 aa)
	K3YR45_SETIT	Uncharacterized protein. (583 aa)
	K3YRF3_SETIT	Uncharacterized protein. (539 aa)
	K3YRN3_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (517 aa)
	K3YSX2_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (410 aa)
	K3YSY1_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (407 aa)
	K3Z3Z9_SETIT	Uncharacterized protein; Belongs to the DEAD box helicase family. (790 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0Q3QWU8	A0A368QX02	A0A0Q3QWU8	A0A368QX02	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.456
A0A0Q3QWU8	A0A368SAJ2	A0A0Q3QWU8	A0A368SAJ2	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.464
A0A0Q3QWU8	K3ZRE6_SETIT	A0A0Q3QWU8	K3ZRE6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.465
A0A0Q3QWU8	K3ZS55_SETIT	A0A0Q3QWU8	K3ZS55	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.404
A0A0Q3QWU8	K4A6Y6_SETIT	A0A0Q3QWU8	K4A6Y6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.464
A0A368PVZ5	A0A368QX02	A0A368PVZ5	A0A368QX02	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A368PVZ5	A0A368SAJ2	A0A368PVZ5	A0A368SAJ2	Uncharacterized protein.	Uncharacterized protein.	0.431
A0A368PVZ5	K3YQW7_SETIT	A0A368PVZ5	K3YQW7	Uncharacterized protein.	Uncharacterized protein.	0.455
A0A368PVZ5	K3YSY1_SETIT	A0A368PVZ5	K3YSY1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.755
A0A368PVZ5	K3ZRE6_SETIT	A0A368PVZ5	K3ZRE6	Uncharacterized protein.	Uncharacterized protein.	0.434
A0A368PVZ5	K3ZS55_SETIT	A0A368PVZ5	K3ZS55	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A368PVZ5	K4A6Y6_SETIT	A0A368PVZ5	K4A6Y6	Uncharacterized protein.	Uncharacterized protein.	0.434
A0A368QX02	A0A0Q3QWU8	A0A368QX02	A0A0Q3QWU8	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.456
A0A368QX02	A0A368PVZ5	A0A368QX02	A0A368PVZ5	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A368QX02	A0A368RYQ4	A0A368QX02	A0A368RYQ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.477
A0A368QX02	A0A368SIL9	A0A368QX02	A0A368SIL9	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.492
A0A368QX02	K3XFN8_SETIT	A0A368QX02	K3XFN8	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A368QX02	K3YR45_SETIT	A0A368QX02	K3YR45	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A368QX02	K3YRN3_SETIT	A0A368QX02	K3YRN3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.481
A0A368QX02	K3Z4Q8_SETIT	A0A368QX02	K3Z4Q8	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.429

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