STRINGSTRING
K3YB21_SETIT K3YB21_SETIT A0A368PL52 A0A368PL52 LSM5 LSM5 A0A368RIM6 A0A368RIM6 K3XFG2_SETIT K3XFG2_SETIT K3XMX9_SETIT K3XMX9_SETIT K3XNH6_SETIT K3XNH6_SETIT K3XNK1_SETIT K3XNK1_SETIT K3XVR9_SETIT K3XVR9_SETIT K3Y010_SETIT K3Y010_SETIT K3YAS3_SETIT K3YAS3_SETIT K3YAY9_SETIT K3YAY9_SETIT K3YB45_SETIT K3YB45_SETIT K3YB50_SETIT K3YB50_SETIT K3YKH7_SETIT K3YKH7_SETIT K3YL50_SETIT K3YL50_SETIT K3YQZ3_SETIT K3YQZ3_SETIT K3YWJ9_SETIT K3YWJ9_SETIT K3YWN5_SETIT K3YWN5_SETIT K3YX55_SETIT K3YX55_SETIT LSM5-2 LSM5-2 K3ZB21_SETIT K3ZB21_SETIT K3ZB47_SETIT K3ZB47_SETIT K3ZB54_SETIT K3ZB54_SETIT K3ZW48_SETIT K3ZW48_SETIT K3ZYM4_SETIT K3ZYM4_SETIT K4AGJ3_SETIT K4AGJ3_SETIT K4AHG4_SETIT K4AHG4_SETIT
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
K3YB21_SETITSmall nuclear ribonucleoprotein Sm D2. (105 aa)
A0A368PL52Sm domain-containing protein. (97 aa)
LSM5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (88 aa)
A0A368RIM6Sm-like protein LSM2; Component of LSM protein complexes, which are involved in RNA processing. (93 aa)
K3XFG2_SETITUncharacterized protein. (644 aa)
K3XMX9_SETITU6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (146 aa)
K3XNH6_SETITSmall nuclear ribonucleoprotein Sm D2. (104 aa)
K3XNK1_SETITU6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
K3XVR9_SETITUncharacterized protein. (652 aa)
K3Y010_SETITSm domain-containing protein. (122 aa)
K3YAS3_SETITU6 snRNA-associated Sm-like protein LSm1; Component of the cytoplasmic LSM1-LSM7 complex which is involved in mRNA degradation. (128 aa)
K3YAY9_SETITSmall nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family. (115 aa)
K3YB45_SETITSm domain-containing protein. (98 aa)
K3YB50_SETITSm domain-containing protein. (97 aa)
K3YKH7_SETITSmall nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (88 aa)
K3YL50_SETITSm domain-containing protein. (61 aa)
K3YQZ3_SETITLsmAD domain-containing protein. (604 aa)
K3YWJ9_SETITSm domain-containing protein. (140 aa)
K3YWN5_SETITSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
K3YX55_SETITSm domain-containing protein. (91 aa)
LSM5-2U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (207 aa)
K3ZB21_SETITSmall nuclear ribonucleoprotein Sm D2. (104 aa)
K3ZB47_SETITU6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (99 aa)
K3ZB54_SETITU6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (97 aa)
K3ZW48_SETITSmall nuclear ribonucleoprotein-associated protein. (264 aa)
K3ZYM4_SETITSmall nuclear ribonucleoprotein G. (81 aa)
K4AGJ3_SETITSmall nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. (132 aa)
K4AHG4_SETITSmall nuclear ribonucleoprotein G. (80 aa)
Your Current Organism:
Setaria italica
NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet
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