(29 nodes) Ribosomal protein S1-like RNA-binding domain network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

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Your Input:
	A0A368PJP2	S1 motif domain-containing protein. (824 aa)
	A0A368PV79	S1 motif domain-containing protein. (896 aa)
	A0A368PW97	Uncharacterized protein. (1904 aa)
	A0A368Q8V1	SHS2_Rpb7-N domain-containing protein. (185 aa)
	A0A368Q9J7	S1 motif domain-containing protein. (326 aa)
	A0A368QFY9	Uncharacterized protein. (514 aa)
	A0A368QIL1	Uncharacterized protein. (177 aa)
	A0A368SS41	S1 motif domain-containing protein. (339 aa)
	A0A368STN3	Uncharacterized protein. (404 aa)
	K3XFD1_SETIT	S1 motif domain-containing protein. (656 aa)
	K3XLG8_SETIT	KH_dom_type_1 domain-containing protein. (239 aa)
	K3XSI3_SETIT	Uncharacterized protein. (440 aa)
	K3XUZ0_SETIT	Uncharacterized protein. (1068 aa)
	K3Y8S4_SETIT	S1 domain-containing protein. (319 aa)
	K3YPD7_SETIT	Uncharacterized protein. (1222 aa)
	K3YPM9_SETIT	S1 motif domain-containing protein. (978 aa)
	K3YQ12_SETIT	S1 motif domain-containing protein. (792 aa)
	K3YVT9_SETIT	Uncharacterized protein. (200 aa)
	K3Z338_SETIT	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family. (1653 aa)
	K3Z3H4_SETIT	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family. (988 aa)
	K3Z5W5_SETIT	Uncharacterized protein. (475 aa)
	K3Z8M0_SETIT	Uncharacterized protein. (283 aa)
	K3ZPW5_SETIT	Uncharacterized protein. (1855 aa)
	K3ZRF2_SETIT	S1 motif domain-containing protein. (645 aa)
	K3ZZA9_SETIT	S1 motif domain-containing protein. (304 aa)
	K4A7M3_SETIT	S1 motif domain-containing protein. (578 aa)
	K4A9U2_SETIT	Uncharacterized protein. (452 aa)
	K4ABD8_SETIT	Uncharacterized protein. (377 aa)
	infA	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. (101 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368PV79	K3Y8S4_SETIT	A0A368PV79	K3Y8S4	S1 motif domain-containing protein.	S1 domain-containing protein.	0.421
A0A368PV79	K3YPM9_SETIT	A0A368PV79	K3YPM9	S1 motif domain-containing protein.	S1 motif domain-containing protein.	0.911
A0A368PV79	K3Z3H4_SETIT	A0A368PV79	K3Z3H4	S1 motif domain-containing protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.523
A0A368PW97	K3XLG8_SETIT	A0A368PW97	K3XLG8	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.921
A0A368PW97	K3XUZ0_SETIT	A0A368PW97	K3XUZ0	Uncharacterized protein.	Uncharacterized protein.	0.670
A0A368PW97	K3Y8S4_SETIT	A0A368PW97	K3Y8S4	Uncharacterized protein.	S1 domain-containing protein.	0.933
A0A368PW97	K3YPD7_SETIT	A0A368PW97	K3YPD7	Uncharacterized protein.	Uncharacterized protein.	0.670
A0A368PW97	K3YVT9_SETIT	A0A368PW97	K3YVT9	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A368PW97	K3Z3H4_SETIT	A0A368PW97	K3Z3H4	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.808
A0A368Q8V1	K3Z338_SETIT	A0A368Q8V1	K3Z338	SHS2_Rpb7-N domain-containing protein.	Transcription elongation factor spt6; Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII). Belongs to the SPT6 family.	0.929
A0A368Q9J7	A0A368SS41	A0A368Q9J7	A0A368SS41	S1 motif domain-containing protein.	S1 motif domain-containing protein.	0.901
A0A368Q9J7	infA	A0A368Q9J7	X4ZEC7	S1 motif domain-containing protein.	Translation initiation factor IF-1, chloroplastic; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.	0.941
A0A368QFY9	A0A368STN3	A0A368QFY9	A0A368STN3	Uncharacterized protein.	Uncharacterized protein.	0.915
A0A368QFY9	K3XLG8_SETIT	A0A368QFY9	K3XLG8	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.780
A0A368QFY9	K3XSI3_SETIT	A0A368QFY9	K3XSI3	Uncharacterized protein.	Uncharacterized protein.	0.903
A0A368QFY9	K3XUZ0_SETIT	A0A368QFY9	K3XUZ0	Uncharacterized protein.	Uncharacterized protein.	0.441
A0A368QFY9	K3Y8S4_SETIT	A0A368QFY9	K3Y8S4	Uncharacterized protein.	S1 domain-containing protein.	0.830
A0A368QFY9	K3YPD7_SETIT	A0A368QFY9	K3YPD7	Uncharacterized protein.	Uncharacterized protein.	0.441
A0A368QFY9	K3YVT9_SETIT	A0A368QFY9	K3YVT9	Uncharacterized protein.	Uncharacterized protein.	0.821
A0A368QFY9	K3Z3H4_SETIT	A0A368QFY9	K3Z3H4	Uncharacterized protein.	Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.	0.808

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