(24 nodes) Lissencephaly type-1-like homology motif network (Setaria italica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	K3XGM8_SETIT	Uncharacterized protein. (517 aa)
	A0A368Q9Y2	LisH domain-containing protein. (1914 aa)
	A0A368R1V9	Uncharacterized protein. (1130 aa)
	A0A368R6D9	Uncharacterized protein. (1183 aa)
	A0A368R7F0	Uncharacterized protein. (881 aa)
	A0A368SHG7	LisH domain-containing protein. (401 aa)
	K3XDX5_SETIT	Uncharacterized protein. (1200 aa)
	K3XDY0_SETIT	Uncharacterized protein. (1186 aa)
	K3XEC8_SETIT	Uncharacterized protein. (897 aa)
	K3XEF1_SETIT	Uncharacterized protein. (868 aa)
	K3XLV4_SETIT	Uncharacterized protein. (216 aa)
	K3XXG4_SETIT	Uncharacterized protein. (390 aa)
	K3Y699_SETIT	Uncharacterized protein. (557 aa)
	K3Y7R1_SETIT	Uncharacterized protein. (404 aa)
	K3Y9K2_SETIT	LisH domain-containing protein. (256 aa)
	K3YFX7_SETIT	Uncharacterized protein. (1138 aa)
	K3YGT1_SETIT	Uncharacterized protein. (599 aa)
	K3YPZ9_SETIT	Uncharacterized protein. (804 aa)
	K3Z336_SETIT	LisH domain-containing protein. (1734 aa)
	K3ZJL4_SETIT	LisH domain-containing protein. (256 aa)
	K4A534_SETIT	Uncharacterized protein. (1129 aa)
	K4A6D9_SETIT	Uncharacterized protein. (722 aa)
	K4A8H6_SETIT	Uncharacterized protein. (522 aa)
	K4AE95_SETIT	Uncharacterized protein. (245 aa)

Your Current Organism:

Setaria italica

NCBI taxonomy Id: 4555
Other names: Chaetochloa italica, Chaetochloa italica (L.) Scribn., Panicum italicum, Panicum italicum L., S. italica, Setaria italica (L.) P.Beauv., Setaria viridis subsp. italica, Setaria viridis subsp. italica (L.) Briq., foxtail millet

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A368R7F0	K3YFX7_SETIT	A0A368R7F0	K3YFX7	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A368R7F0	K4A534_SETIT	A0A368R7F0	K4A534	Uncharacterized protein.	Uncharacterized protein.	0.461
K3XEC8_SETIT	K3YFX7_SETIT	K3XEC8	K3YFX7	Uncharacterized protein.	Uncharacterized protein.	0.414
K3XEC8_SETIT	K4A534_SETIT	K3XEC8	K4A534	Uncharacterized protein.	Uncharacterized protein.	0.469
K3XEF1_SETIT	K3YFX7_SETIT	K3XEF1	K3YFX7	Uncharacterized protein.	Uncharacterized protein.	0.402
K3XEF1_SETIT	K4A534_SETIT	K3XEF1	K4A534	Uncharacterized protein.	Uncharacterized protein.	0.438
K3XLV4_SETIT	K3XXG4_SETIT	K3XLV4	K3XXG4	Uncharacterized protein.	Uncharacterized protein.	0.924
K3XLV4_SETIT	K3Y7R1_SETIT	K3XLV4	K3Y7R1	Uncharacterized protein.	Uncharacterized protein.	0.925
K3XLV4_SETIT	K3YGT1_SETIT	K3XLV4	K3YGT1	Uncharacterized protein.	Uncharacterized protein.	0.852
K3XLV4_SETIT	K4A8H6_SETIT	K3XLV4	K4A8H6	Uncharacterized protein.	Uncharacterized protein.	0.852
K3XXG4_SETIT	K3XLV4_SETIT	K3XXG4	K3XLV4	Uncharacterized protein.	Uncharacterized protein.	0.924
K3XXG4_SETIT	K3Y7R1_SETIT	K3XXG4	K3Y7R1	Uncharacterized protein.	Uncharacterized protein.	0.983
K3XXG4_SETIT	K3YGT1_SETIT	K3XXG4	K3YGT1	Uncharacterized protein.	Uncharacterized protein.	0.945
K3XXG4_SETIT	K4A8H6_SETIT	K3XXG4	K4A8H6	Uncharacterized protein.	Uncharacterized protein.	0.945
K3XXG4_SETIT	K4AE95_SETIT	K3XXG4	K4AE95	Uncharacterized protein.	Uncharacterized protein.	0.929
K3Y7R1_SETIT	K3XLV4_SETIT	K3Y7R1	K3XLV4	Uncharacterized protein.	Uncharacterized protein.	0.925
K3Y7R1_SETIT	K3XXG4_SETIT	K3Y7R1	K3XXG4	Uncharacterized protein.	Uncharacterized protein.	0.983
K3Y7R1_SETIT	K3YGT1_SETIT	K3Y7R1	K3YGT1	Uncharacterized protein.	Uncharacterized protein.	0.814
K3Y7R1_SETIT	K4A8H6_SETIT	K3Y7R1	K4A8H6	Uncharacterized protein.	Uncharacterized protein.	0.814
K3Y7R1_SETIT	K4AE95_SETIT	K3Y7R1	K4AE95	Uncharacterized protein.	Uncharacterized protein.	0.938

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