(21 nodes) Mixed, incl. Ribosomal protein L17, and L28p-like network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1W0W196	Uncharacterized protein. (241 aa)
	A0A1Z5RBN3	Uncharacterized protein. (207 aa)
	A0A1Z5S4T6	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (209 aa)
	A0A1Z5SB71	Ribosomal_S10 domain-containing protein. (110 aa)
	rpl36	50S ribosomal protein L36, chloroplastic. (37 aa)
	C5WVZ6_SORBI	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (97 aa)
	C5WY08_SORBI	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family. (152 aa)
	C5X0K4_SORBI	Uncharacterized protein. (145 aa)
	C5X466_SORBI	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family. (412 aa)
	C5XAT5_SORBI	Uncharacterized protein. (210 aa)
	C5XEG8_SORBI	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family. (133 aa)
	C5XP43_SORBI	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (161 aa)
	C5XS12_SORBI	Uncharacterized protein. (221 aa)
	C5XV43_SORBI	RIBOSOMAL_L9 domain-containing protein. (194 aa)
	C5XZB9_SORBI	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (161 aa)
	C5XZH7_SORBI	Uncharacterized protein. (209 aa)
	C5YLY2_SORBI	Uncharacterized protein. (236 aa)
	C5YVG2_SORBI	Uncharacterized protein. (250 aa)
	C5Z0W6_SORBI	Uncharacterized protein. (57 aa)
	C5Z194_SORBI	Uncharacterized protein. (146 aa)
	C5Z8W0_SORBI	Ribosomal_L2_C domain-containing protein. (434 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1W0W196	A0A1Z5RBN3	A0A1W0W196	A0A1Z5RBN3	Uncharacterized protein.	Uncharacterized protein.	0.981
A0A1W0W196	A0A1Z5S4T6	A0A1W0W196	A0A1Z5S4T6	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.976
A0A1W0W196	A0A1Z5SB71	A0A1W0W196	A0A1Z5SB71	Uncharacterized protein.	Ribosomal_S10 domain-containing protein.	0.971
A0A1W0W196	C5WVZ6_SORBI	A0A1W0W196	C5WVZ6	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.980
A0A1W0W196	C5WY08_SORBI	A0A1W0W196	C5WY08	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.970
A0A1W0W196	C5X0K4_SORBI	A0A1W0W196	C5X0K4	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1W0W196	C5X466_SORBI	A0A1W0W196	C5X466	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.985
A0A1W0W196	C5XAT5_SORBI	A0A1W0W196	C5XAT5	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A1W0W196	C5XEG8_SORBI	A0A1W0W196	C5XEG8	Uncharacterized protein.	50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.	0.992
A0A1W0W196	C5XP43_SORBI	A0A1W0W196	C5XP43	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.970
A0A1W0W196	C5XS12_SORBI	A0A1W0W196	C5XS12	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1W0W196	C5XV43_SORBI	A0A1W0W196	C5XV43	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.983
A0A1W0W196	C5XZB9_SORBI	A0A1W0W196	C5XZB9	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.970
A0A1W0W196	C5XZH7_SORBI	A0A1W0W196	C5XZH7	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A1W0W196	C5YLY2_SORBI	A0A1W0W196	C5YLY2	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1W0W196	C5YVG2_SORBI	A0A1W0W196	C5YVG2	Uncharacterized protein.	Uncharacterized protein.	0.983
A0A1W0W196	C5Z0W6_SORBI	A0A1W0W196	C5Z0W6	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A1W0W196	C5Z194_SORBI	A0A1W0W196	C5Z194	Uncharacterized protein.	Uncharacterized protein.	0.907
A0A1W0W196	C5Z8W0_SORBI	A0A1W0W196	C5Z8W0	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.967
A0A1W0W196	rpl36	A0A1W0W196	A1E9V8	Uncharacterized protein.	50S ribosomal protein L36, chloroplastic.	0.980

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