(5 nodes) Mixed, incl. L21-like superfamily, and Ribosomal L28 family network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1W0W196	Uncharacterized protein. (241 aa)
	C5X0K4_SORBI	Uncharacterized protein. (145 aa)
	C5XS12_SORBI	Uncharacterized protein. (221 aa)
	C5XV43_SORBI	RIBOSOMAL_L9 domain-containing protein. (194 aa)
	C5XZH7_SORBI	Uncharacterized protein. (209 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1W0W196	C5X0K4_SORBI	A0A1W0W196	C5X0K4	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1W0W196	C5XS12_SORBI	A0A1W0W196	C5XS12	Uncharacterized protein.	Uncharacterized protein.	0.982
A0A1W0W196	C5XV43_SORBI	A0A1W0W196	C5XV43	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.983
A0A1W0W196	C5XZH7_SORBI	A0A1W0W196	C5XZH7	Uncharacterized protein.	Uncharacterized protein.	0.983
C5X0K4_SORBI	A0A1W0W196	C5X0K4	A0A1W0W196	Uncharacterized protein.	Uncharacterized protein.	0.982
C5X0K4_SORBI	C5XS12_SORBI	C5X0K4	C5XS12	Uncharacterized protein.	Uncharacterized protein.	0.982
C5X0K4_SORBI	C5XV43_SORBI	C5X0K4	C5XV43	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.981
C5X0K4_SORBI	C5XZH7_SORBI	C5X0K4	C5XZH7	Uncharacterized protein.	Uncharacterized protein.	0.982
C5XS12_SORBI	A0A1W0W196	C5XS12	A0A1W0W196	Uncharacterized protein.	Uncharacterized protein.	0.982
C5XS12_SORBI	C5X0K4_SORBI	C5XS12	C5X0K4	Uncharacterized protein.	Uncharacterized protein.	0.982
C5XS12_SORBI	C5XV43_SORBI	C5XS12	C5XV43	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.979
C5XS12_SORBI	C5XZH7_SORBI	C5XS12	C5XZH7	Uncharacterized protein.	Uncharacterized protein.	0.983
C5XV43_SORBI	A0A1W0W196	C5XV43	A0A1W0W196	RIBOSOMAL_L9 domain-containing protein.	Uncharacterized protein.	0.983
C5XV43_SORBI	C5X0K4_SORBI	C5XV43	C5X0K4	RIBOSOMAL_L9 domain-containing protein.	Uncharacterized protein.	0.981
C5XV43_SORBI	C5XS12_SORBI	C5XV43	C5XS12	RIBOSOMAL_L9 domain-containing protein.	Uncharacterized protein.	0.979
C5XV43_SORBI	C5XZH7_SORBI	C5XV43	C5XZH7	RIBOSOMAL_L9 domain-containing protein.	Uncharacterized protein.	0.981
C5XZH7_SORBI	A0A1W0W196	C5XZH7	A0A1W0W196	Uncharacterized protein.	Uncharacterized protein.	0.983
C5XZH7_SORBI	C5X0K4_SORBI	C5XZH7	C5X0K4	Uncharacterized protein.	Uncharacterized protein.	0.982
C5XZH7_SORBI	C5XS12_SORBI	C5XZH7	C5XS12	Uncharacterized protein.	Uncharacterized protein.	0.983
C5XZH7_SORBI	C5XV43_SORBI	C5XZH7	C5XV43	Uncharacterized protein.	RIBOSOMAL_L9 domain-containing protein.	0.981

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