(6 nodes) Mixed, incl. Ribosomal protein L13, bacterial-type, and Ribosomal protein L6, bacterial-type network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6QQU9	Uncharacterized protein. (283 aa)
	rpl16	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family. (136 aa)
	rpl2-A	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family. (271 aa)
	C5WZQ4_SORBI	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family. (226 aa)
	C5XK39_SORBI	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family. (229 aa)
	C5XTY9_SORBI	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family. (270 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6QQU9	C5WZQ4_SORBI	A0A1B6QQU9	C5WZQ4	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.979
A0A1B6QQU9	C5XK39_SORBI	A0A1B6QQU9	C5XK39	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.973
A0A1B6QQU9	C5XTY9_SORBI	A0A1B6QQU9	C5XTY9	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.969
A0A1B6QQU9	rpl16	A0A1B6QQU9	A1E9W2	Uncharacterized protein.	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.	0.987
A0A1B6QQU9	rpl2-A	A0A1B6QQU9	A1E9W6	Uncharacterized protein.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.987
C5WZQ4_SORBI	A0A1B6QQU9	C5WZQ4	A0A1B6QQU9	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein.	0.979
C5WZQ4_SORBI	C5XK39_SORBI	C5WZQ4	C5XK39	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.973
C5WZQ4_SORBI	C5XTY9_SORBI	C5WZQ4	C5XTY9	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.969
C5WZQ4_SORBI	rpl16	C5WZQ4	A1E9W2	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.	0.978
C5WZQ4_SORBI	rpl2-A	C5WZQ4	A1E9W6	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.984
C5XK39_SORBI	A0A1B6QQU9	C5XK39	A0A1B6QQU9	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein.	0.973
C5XK39_SORBI	C5WZQ4_SORBI	C5XK39	C5WZQ4	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.973
C5XK39_SORBI	C5XTY9_SORBI	C5XK39	C5XTY9	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	0.976
C5XK39_SORBI	rpl16	C5XK39	A1E9W2	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.	0.974
C5XK39_SORBI	rpl2-A	C5XK39	A1E9W6	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.969
C5XTY9_SORBI	A0A1B6QQU9	C5XTY9	A0A1B6QQU9	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.969
C5XTY9_SORBI	C5WZQ4_SORBI	C5XTY9	C5WZQ4	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL6 family.	0.969
C5XTY9_SORBI	C5XK39_SORBI	C5XTY9	C5XK39	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL13 family.	0.976
C5XTY9_SORBI	rpl16	C5XTY9	A1E9W2	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L16, chloroplastic; Belongs to the universal ribosomal protein uL16 family.	0.969
C5XTY9_SORBI	rpl2-A	C5XTY9	A1E9W6	Uncharacterized protein; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L2, chloroplastic; Belongs to the universal ribosomal protein uL2 family.	0.959

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