(23 nodes) Mixed, incl. Lipid A metabolic process, and Ribonuclease H2 complex network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PC64	DAHP_synth_1 domain-containing protein. (291 aa)
	A0A1B6PD50	Uncharacterized protein. (79 aa)
	A0A1B6PJ50	RING-type domain-containing protein. (402 aa)
	A0A1B6PLL3	Uncharacterized protein. (302 aa)
	A0A1B6Q637	Uncharacterized protein. (474 aa)
	A0A1B6QNR0	Exonuclease domain-containing protein. (315 aa)
	A0A1W0VRP6	DCD domain-containing protein. (997 aa)
	A0A1W0VWI5	HD domain-containing protein. (481 aa)
	A0A1W0VZ91	Acetyltransf_11 domain-containing protein. (338 aa)
	A0A1Z5R6V8	Uncharacterized protein. (401 aa)
	A0A1Z5SAZ1	Uncharacterized protein. (339 aa)
	C5WPB0_SORBI	RING-type domain-containing protein. (305 aa)
	C5WW99_SORBI	Uncharacterized protein. (155 aa)
	C5WWA7_SORBI	DNA_MISMATCH_REPAIR_2 domain-containing protein. (831 aa)
	C5X5T9_SORBI	Uncharacterized protein. (285 aa)
	C5XFJ5_SORBI	RING-type domain-containing protein. (459 aa)
	C5XQG9_SORBI	Glycos_transf_N domain-containing protein. (453 aa)
	C5XVC8_SORBI	Uncharacterized protein; Belongs to the SIS family. GutQ/KpsF subfamily. (345 aa)
	C5XW32_SORBI	Uncharacterized protein. (160 aa)
	C5YG62_SORBI	Exonuclease domain-containing protein. (283 aa)
	C5YS45_SORBI	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (297 aa)
	C5YVI6_SORBI	Uncharacterized protein. (296 aa)
	C5Z8P5_SORBI	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family. (297 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PC64	A0A1B6Q637	A0A1B6PC64	A0A1B6Q637	DAHP_synth_1 domain-containing protein.	Uncharacterized protein.	0.506
A0A1B6PC64	A0A1W0VZ91	A0A1B6PC64	A0A1W0VZ91	DAHP_synth_1 domain-containing protein.	Acetyltransf_11 domain-containing protein.	0.803
A0A1B6PC64	A0A1Z5R6V8	A0A1B6PC64	A0A1Z5R6V8	DAHP_synth_1 domain-containing protein.	Uncharacterized protein.	0.468
A0A1B6PC64	A0A1Z5SAZ1	A0A1B6PC64	A0A1Z5SAZ1	DAHP_synth_1 domain-containing protein.	Uncharacterized protein.	0.809
A0A1B6PC64	C5X5T9_SORBI	A0A1B6PC64	C5X5T9	DAHP_synth_1 domain-containing protein.	Uncharacterized protein.	0.811
A0A1B6PC64	C5XQG9_SORBI	A0A1B6PC64	C5XQG9	DAHP_synth_1 domain-containing protein.	Glycos_transf_N domain-containing protein.	0.791
A0A1B6PC64	C5XVC8_SORBI	A0A1B6PC64	C5XVC8	DAHP_synth_1 domain-containing protein.	Uncharacterized protein; Belongs to the SIS family. GutQ/KpsF subfamily.	0.675
A0A1B6PC64	C5YVI6_SORBI	A0A1B6PC64	C5YVI6	DAHP_synth_1 domain-containing protein.	Uncharacterized protein.	0.943
A0A1B6PLL3	C5YS45_SORBI	A0A1B6PLL3	C5YS45	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.540
A0A1B6PLL3	C5Z8P5_SORBI	A0A1B6PLL3	C5Z8P5	Uncharacterized protein.	Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.	0.540
A0A1B6Q637	A0A1B6PC64	A0A1B6Q637	A0A1B6PC64	Uncharacterized protein.	DAHP_synth_1 domain-containing protein.	0.506
A0A1B6Q637	A0A1W0VZ91	A0A1B6Q637	A0A1W0VZ91	Uncharacterized protein.	Acetyltransf_11 domain-containing protein.	0.872
A0A1B6Q637	A0A1Z5R6V8	A0A1B6Q637	A0A1Z5R6V8	Uncharacterized protein.	Uncharacterized protein.	0.777
A0A1B6Q637	A0A1Z5SAZ1	A0A1B6Q637	A0A1Z5SAZ1	Uncharacterized protein.	Uncharacterized protein.	0.693
A0A1B6Q637	C5X5T9_SORBI	A0A1B6Q637	C5X5T9	Uncharacterized protein.	Uncharacterized protein.	0.803
A0A1B6Q637	C5XQG9_SORBI	A0A1B6Q637	C5XQG9	Uncharacterized protein.	Glycos_transf_N domain-containing protein.	0.741
A0A1B6Q637	C5XVC8_SORBI	A0A1B6Q637	C5XVC8	Uncharacterized protein.	Uncharacterized protein; Belongs to the SIS family. GutQ/KpsF subfamily.	0.413
A0A1B6Q637	C5YVI6_SORBI	A0A1B6Q637	C5YVI6	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A1W0VZ91	A0A1B6PC64	A0A1W0VZ91	A0A1B6PC64	Acetyltransf_11 domain-containing protein.	DAHP_synth_1 domain-containing protein.	0.803
A0A1W0VZ91	A0A1B6Q637	A0A1W0VZ91	A0A1B6Q637	Acetyltransf_11 domain-containing protein.	Uncharacterized protein.	0.872

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