(15 nodes) TIFY/JAZ family, and COI1, F-box network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PKE6	Tify domain-containing protein. (178 aa)
	A0A1B6QL45	Tify domain-containing protein. (221 aa)
	A0A1B6QMQ5	BHLH domain-containing protein. (707 aa)
	A0A1W0W266	Tify domain-containing protein. (342 aa)
	A0A1Z5RKU3	Uncharacterized protein. (251 aa)
	C5WQ50_SORBI	Uncharacterized protein. (591 aa)
	C5WXI6_SORBI	Tify domain-containing protein. (228 aa)
	C5X9K7_SORBI	Tify domain-containing protein. (242 aa)
	C5XC57_SORBI	Tify domain-containing protein. (408 aa)
	C5XGY7_SORBI	Tify domain-containing protein. (100 aa)
	C5XJK2_SORBI	BHLH domain-containing protein. (622 aa)
	C5XPW1_SORBI	Uncharacterized protein. (596 aa)
	C5YL41_SORBI	Tify domain-containing protein. (428 aa)
	C5YVG5_SORBI	Uncharacterized protein. (474 aa)
	C5YYV2_SORBI	Uncharacterized protein. (599 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PKE6	A0A1B6QMQ5	A0A1B6PKE6	A0A1B6QMQ5	Tify domain-containing protein.	BHLH domain-containing protein.	0.976
A0A1B6PKE6	A0A1W0W266	A0A1B6PKE6	A0A1W0W266	Tify domain-containing protein.	Tify domain-containing protein.	0.525
A0A1B6PKE6	A0A1Z5RKU3	A0A1B6PKE6	A0A1Z5RKU3	Tify domain-containing protein.	Uncharacterized protein.	0.574
A0A1B6PKE6	C5WQ50_SORBI	A0A1B6PKE6	C5WQ50	Tify domain-containing protein.	Uncharacterized protein.	0.650
A0A1B6PKE6	C5X9K7_SORBI	A0A1B6PKE6	C5X9K7	Tify domain-containing protein.	Tify domain-containing protein.	0.525
A0A1B6PKE6	C5XJK2_SORBI	A0A1B6PKE6	C5XJK2	Tify domain-containing protein.	BHLH domain-containing protein.	0.537
A0A1B6PKE6	C5XPW1_SORBI	A0A1B6PKE6	C5XPW1	Tify domain-containing protein.	Uncharacterized protein.	0.781
A0A1B6PKE6	C5YL41_SORBI	A0A1B6PKE6	C5YL41	Tify domain-containing protein.	Tify domain-containing protein.	0.550
A0A1B6PKE6	C5YVG5_SORBI	A0A1B6PKE6	C5YVG5	Tify domain-containing protein.	Uncharacterized protein.	0.741
A0A1B6PKE6	C5YYV2_SORBI	A0A1B6PKE6	C5YYV2	Tify domain-containing protein.	Uncharacterized protein.	0.781
A0A1B6QL45	A0A1B6QMQ5	A0A1B6QL45	A0A1B6QMQ5	Tify domain-containing protein.	BHLH domain-containing protein.	0.933
A0A1B6QL45	C5WQ50_SORBI	A0A1B6QL45	C5WQ50	Tify domain-containing protein.	Uncharacterized protein.	0.658
A0A1B6QL45	C5XPW1_SORBI	A0A1B6QL45	C5XPW1	Tify domain-containing protein.	Uncharacterized protein.	0.820
A0A1B6QL45	C5YL41_SORBI	A0A1B6QL45	C5YL41	Tify domain-containing protein.	Tify domain-containing protein.	0.506
A0A1B6QL45	C5YYV2_SORBI	A0A1B6QL45	C5YYV2	Tify domain-containing protein.	Uncharacterized protein.	0.820
A0A1B6QMQ5	A0A1B6PKE6	A0A1B6QMQ5	A0A1B6PKE6	BHLH domain-containing protein.	Tify domain-containing protein.	0.976
A0A1B6QMQ5	A0A1B6QL45	A0A1B6QMQ5	A0A1B6QL45	BHLH domain-containing protein.	Tify domain-containing protein.	0.933
A0A1B6QMQ5	A0A1W0W266	A0A1B6QMQ5	A0A1W0W266	BHLH domain-containing protein.	Tify domain-containing protein.	0.587
A0A1B6QMQ5	A0A1Z5RKU3	A0A1B6QMQ5	A0A1Z5RKU3	BHLH domain-containing protein.	Uncharacterized protein.	0.884
A0A1B6QMQ5	C5WXI6_SORBI	A0A1B6QMQ5	C5WXI6	BHLH domain-containing protein.	Tify domain-containing protein.	0.956

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