(22 nodes) Exosome (RNase complex) network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YRB7	Uncharacterized protein. (449 aa)
	A0A194YT40	Uncharacterized protein. (200 aa)
	A0A1B6QEJ2	HRDC domain-containing protein. (993 aa)
	A0A1B6QKN7	HRDC domain-containing protein. (901 aa)
	A0A1B6QQE5	HRDC domain-containing protein. (715 aa)
	A0A1W0VR23	Uncharacterized protein. (125 aa)
	A0A1W0W0C8	RNB domain-containing protein. (782 aa)
	A0A1Z5R634	Uncharacterized protein. (287 aa)
	A0A1Z5R918	Uncharacterized protein. (259 aa)
	A0A1Z5RPC1	Uncharacterized protein. (1190 aa)
	A0A1Z5RPM6	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (996 aa)
	A0A1Z5S7C0	3'-5' exonuclease domain-containing protein. (302 aa)
	C5WS01_SORBI	RNase_PH domain-containing protein. (239 aa)
	C5WZX9_SORBI	Uncharacterized protein; Belongs to the RNR ribonuclease family. (934 aa)
	C5X376_SORBI	Uncharacterized protein. (261 aa)
	C5XFW6_SORBI	KH_dom_type_1 domain-containing protein. (239 aa)
	C5Y9M2_SORBI	S1 domain-containing protein. (319 aa)
	C5YHQ9_SORBI	Uncharacterized protein. (306 aa)
	C5YVG7_SORBI	Uncharacterized protein. (242 aa)
	C5YZ99_SORBI	Uncharacterized protein. (242 aa)
	C5Z244_SORBI	Uncharacterized protein. (1001 aa)
	C5Z2L4_SORBI	Uncharacterized protein. (286 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YRB7	A0A194YT40	A0A194YRB7	A0A194YT40	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A194YRB7	A0A1B6QEJ2	A0A194YRB7	A0A1B6QEJ2	Uncharacterized protein.	HRDC domain-containing protein.	0.984
A0A194YRB7	A0A1B6QKN7	A0A194YRB7	A0A1B6QKN7	Uncharacterized protein.	HRDC domain-containing protein.	0.984
A0A194YRB7	A0A1B6QQE5	A0A194YRB7	A0A1B6QQE5	Uncharacterized protein.	HRDC domain-containing protein.	0.984
A0A194YRB7	A0A1W0VR23	A0A194YRB7	A0A1W0VR23	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A194YRB7	A0A1W0W0C8	A0A194YRB7	A0A1W0W0C8	Uncharacterized protein.	RNB domain-containing protein.	0.989
A0A194YRB7	A0A1Z5R634	A0A194YRB7	A0A1Z5R634	Uncharacterized protein.	Uncharacterized protein.	0.994
A0A194YRB7	A0A1Z5R918	A0A194YRB7	A0A1Z5R918	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A194YRB7	A0A1Z5RPC1	A0A194YRB7	A0A1Z5RPC1	Uncharacterized protein.	Uncharacterized protein.	0.964
A0A194YRB7	A0A1Z5RPM6	A0A194YRB7	A0A1Z5RPM6	Uncharacterized protein.	DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'.	0.989
A0A194YRB7	A0A1Z5S7C0	A0A194YRB7	A0A1Z5S7C0	Uncharacterized protein.	3'-5' exonuclease domain-containing protein.	0.984
A0A194YRB7	C5WS01_SORBI	A0A194YRB7	C5WS01	Uncharacterized protein.	RNase_PH domain-containing protein.	0.997
A0A194YRB7	C5WZX9_SORBI	A0A194YRB7	C5WZX9	Uncharacterized protein.	Uncharacterized protein; Belongs to the RNR ribonuclease family.	0.989
A0A194YRB7	C5X376_SORBI	A0A194YRB7	C5X376	Uncharacterized protein.	Uncharacterized protein.	0.990
A0A194YRB7	C5XFW6_SORBI	A0A194YRB7	C5XFW6	Uncharacterized protein.	KH_dom_type_1 domain-containing protein.	0.997
A0A194YRB7	C5Y9M2_SORBI	A0A194YRB7	C5Y9M2	Uncharacterized protein.	S1 domain-containing protein.	0.993
A0A194YRB7	C5YHQ9_SORBI	A0A194YRB7	C5YHQ9	Uncharacterized protein.	Uncharacterized protein.	0.997
A0A194YRB7	C5YVG7_SORBI	A0A194YRB7	C5YVG7	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A194YRB7	C5YZ99_SORBI	A0A194YRB7	C5YZ99	Uncharacterized protein.	Uncharacterized protein.	0.992
A0A194YRB7	C5Z244_SORBI	A0A194YRB7	C5Z244	Uncharacterized protein.	Uncharacterized protein.	0.981

page 1 of 23

Server load: low (40%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About