(42 nodes) Cutin, suberine and wax biosynthesis, and Rapid ALkalinization Factor network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PDR2	XH domain-containing protein. (410 aa)
	A0A1B6PMI6	Cyclic nucleotide-binding domain-containing protein. (424 aa)
	A0A1B6PMK4	Cyclic nucleotide-binding domain-containing protein. (427 aa)
	A0A1B6PS00	Uncharacterized protein. (464 aa)
	A0A1B6Q7M7	Uncharacterized protein. (272 aa)
	A0A1B6Q7Y5	Uncharacterized protein. (445 aa)
	A0A1B6Q7Y6	Uncharacterized protein. (433 aa)
	A0A1B6Q822	Uncharacterized protein. (129 aa)
	A0A1B6QEZ9	SEC7 domain-containing protein. (1705 aa)
	A0A1B6QK61	Uncharacterized protein; Belongs to the cytochrome P450 family. (548 aa)
	A0A1W0VSC1	Uncharacterized protein. (227 aa)
	A0A1W0W0K2	Uncharacterized protein; Belongs to the cytochrome P450 family. (547 aa)
	A0A1W0W0N0	Uncharacterized protein. (456 aa)
	A0A1Z5R840	Protein kinase domain-containing protein. (505 aa)
	A0A1Z5R9W4	Uncharacterized protein. (358 aa)
	A0A1Z5RCE5	Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (351 aa)
	A0A1Z5RPI2	Uncharacterized protein; Belongs to the cytochrome P450 family. (494 aa)
	A0A1Z5SAN6	Uncharacterized protein. (344 aa)
	NIP2-1	NOD26-like major intrinsic protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (297 aa)
	C5WQM0_SORBI	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (194 aa)
	C5WR79_SORBI	Protein kinase domain-containing protein. (478 aa)
	C5WSN8_SORBI	Uncharacterized protein. (232 aa)
	C5WVZ4_SORBI	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (181 aa)
	C5WWT3_SORBI	Uncharacterized protein. (538 aa)
	C5X4B0_SORBI	Uncharacterized protein. (127 aa)
	C5XAP7_SORBI	Uncharacterized protein. (591 aa)
	C5XFV5_SORBI	Uncharacterized protein. (142 aa)
	C5XHN8_SORBI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (470 aa)
	C5XJY9_SORBI	Uncharacterized protein. (115 aa)
	C5XWK5_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (536 aa)
	C5XZA3_SORBI	EF-hand domain-containing protein. (222 aa)
	C5Y0F1_SORBI	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (194 aa)
	C5YBZ6_SORBI	Uncharacterized protein. (307 aa)
	C5YDX4_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (538 aa)
	C5YFS1_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (544 aa)
	C5YKR5_SORBI	GMC_OxRdtase_N domain-containing protein. (584 aa)
	C5Z6X4_SORBI	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family. (189 aa)
	C5Z7Z3_SORBI	Uncharacterized protein. (228 aa)
	C5Z7Z4_SORBI	EF-hand domain-containing protein. (219 aa)
	C5Z7Z5_SORBI	EF-hand domain-containing protein. (213 aa)
	C5Z7Z7_SORBI	Uncharacterized protein. (213 aa)
	C5Z857_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (521 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PDR2	A0A1B6Q822	A0A1B6PDR2	A0A1B6Q822	XH domain-containing protein.	Uncharacterized protein.	0.617
A0A1B6PDR2	C5WQM0_SORBI	A0A1B6PDR2	C5WQM0	XH domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.420
A0A1B6PDR2	C5WVZ4_SORBI	A0A1B6PDR2	C5WVZ4	XH domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.420
A0A1B6PDR2	C5X4B0_SORBI	A0A1B6PDR2	C5X4B0	XH domain-containing protein.	Uncharacterized protein.	0.617
A0A1B6PDR2	C5XFV5_SORBI	A0A1B6PDR2	C5XFV5	XH domain-containing protein.	Uncharacterized protein.	0.617
A0A1B6PDR2	C5XJY9_SORBI	A0A1B6PDR2	C5XJY9	XH domain-containing protein.	Uncharacterized protein.	0.617
A0A1B6PDR2	C5XZA3_SORBI	A0A1B6PDR2	C5XZA3	XH domain-containing protein.	EF-hand domain-containing protein.	0.617
A0A1B6PDR2	C5Y0F1_SORBI	A0A1B6PDR2	C5Y0F1	XH domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.420
A0A1B6PDR2	C5Z6X4_SORBI	A0A1B6PDR2	C5Z6X4	XH domain-containing protein.	Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.	0.420
A0A1B6PDR2	C5Z7Z3_SORBI	A0A1B6PDR2	C5Z7Z3	XH domain-containing protein.	Uncharacterized protein.	0.617
A0A1B6PDR2	C5Z7Z7_SORBI	A0A1B6PDR2	C5Z7Z7	XH domain-containing protein.	Uncharacterized protein.	0.617
A0A1B6PMI6	A0A1B6PMK4	A0A1B6PMI6	A0A1B6PMK4	Cyclic nucleotide-binding domain-containing protein.	Cyclic nucleotide-binding domain-containing protein.	0.900
A0A1B6PMI6	A0A1B6Q7M7	A0A1B6PMI6	A0A1B6Q7M7	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.807
A0A1B6PMI6	A0A1B6QK61	A0A1B6PMI6	A0A1B6QK61	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.800
A0A1B6PMI6	A0A1W0VSC1	A0A1B6PMI6	A0A1W0VSC1	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.600
A0A1B6PMI6	A0A1W0W0K2	A0A1B6PMI6	A0A1W0W0K2	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.819
A0A1B6PMI6	A0A1Z5RPI2	A0A1B6PMI6	A0A1Z5RPI2	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.807
A0A1B6PMI6	A0A1Z5SAN6	A0A1B6PMI6	A0A1Z5SAN6	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.600
A0A1B6PMI6	C5WSN8_SORBI	A0A1B6PMI6	C5WSN8	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.600
A0A1B6PMI6	C5WWT3_SORBI	A0A1B6PMI6	C5WWT3	Cyclic nucleotide-binding domain-containing protein.	Uncharacterized protein.	0.801

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