(34 nodes) Preribosome, large subunit precursor, and Ribosome biogenesis protein BRX1 network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

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protein homology

Your Input:
	A0A194YRP1	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (692 aa)
	A0A1B6PH22	Uncharacterized protein. (57 aa)
	A0A1B6PPU2	Uncharacterized protein. (675 aa)
	A0A1B6PSZ2	Uncharacterized protein. (57 aa)
	A0A1B6Q872	RRM domain-containing protein. (215 aa)
	A0A1B6QG83	Uncharacterized protein. (260 aa)
	A0A1B6QH57	FtsJ domain-containing protein. (232 aa)
	A0A1B6QK03	Uncharacterized protein. (753 aa)
	A0A1W0VS20	NOG1_N domain-containing protein. (180 aa)
	A0A1W0W5J2	OBG-type G domain-containing protein. (586 aa)
	A0A1Z5R9J1	Uncharacterized protein. (159 aa)
	A0A1Z5RA94	Uncharacterized protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (576 aa)
	A0A1Z5RE75	Uncharacterized protein. (251 aa)
	A0A1Z5RFF6	Uncharacterized protein. (538 aa)
	C5WNV4_SORBI	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (619 aa)
	C5WWJ1_SORBI	Uncharacterized protein. (851 aa)
	C5X0P0_SORBI	Brix domain-containing protein. (348 aa)
	C5X769_SORBI	Uncharacterized protein. (324 aa)
	C5X8H8_SORBI	Uncharacterized protein. (287 aa)
	C5X9C7_SORBI	WD_REPEATS_REGION domain-containing protein. (478 aa)
	C5XD79_SORBI	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family. (478 aa)
	C5XGC8_SORBI	Protein MAK16 homolog; Belongs to the MAK16 family. (284 aa)
	C5XJT9_SORBI	Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family. (681 aa)
	C5XNL5_SORBI	RNA helicase. (644 aa)
	C5XUB8_SORBI	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (188 aa)
	C5XY61_SORBI	Uncharacterized protein. (387 aa)
	C5Y2Z2_SORBI	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (231 aa)
	C5YVX0_SORBI	Putative rRNA methyltransferase; Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits. (819 aa)
	C5YWW5_SORBI	Uncharacterized protein. (189 aa)
	C5YYC9_SORBI	G domain-containing protein. (375 aa)
	C5Z0R9_SORBI	Brix domain-containing protein. (310 aa)
	C5Z3G3_SORBI	Brix domain-containing protein. (362 aa)
	C5Z7H8_SORBI	Uncharacterized protein. (273 aa)
	C5Z8H6_SORBI	Uncharacterized protein. (95 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YRP1	A0A1B6PH22	A0A194YRP1	A0A1B6PH22	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.852
A0A194YRP1	A0A1B6PPU2	A0A194YRP1	A0A1B6PPU2	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.895
A0A194YRP1	A0A1B6PSZ2	A0A194YRP1	A0A1B6PSZ2	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.852
A0A194YRP1	A0A1B6Q872	A0A194YRP1	A0A1B6Q872	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	RRM domain-containing protein.	0.958
A0A194YRP1	A0A1B6QG83	A0A194YRP1	A0A1B6QG83	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.920
A0A194YRP1	A0A1B6QH57	A0A194YRP1	A0A1B6QH57	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	FtsJ domain-containing protein.	0.956
A0A194YRP1	A0A1B6QK03	A0A194YRP1	A0A1B6QK03	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.895
A0A194YRP1	A0A1W0VS20	A0A194YRP1	A0A1W0VS20	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	NOG1_N domain-containing protein.	0.849
A0A194YRP1	A0A1W0W5J2	A0A194YRP1	A0A1W0W5J2	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	OBG-type G domain-containing protein.	0.849
A0A194YRP1	A0A1Z5R9J1	A0A194YRP1	A0A1Z5R9J1	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.958
A0A194YRP1	A0A1Z5RE75	A0A194YRP1	A0A1Z5RE75	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.913
A0A194YRP1	A0A1Z5RFF6	A0A194YRP1	A0A1Z5RFF6	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.713
A0A194YRP1	C5WNV4_SORBI	A0A194YRP1	C5WNV4	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.	0.972
A0A194YRP1	C5WWJ1_SORBI	A0A194YRP1	C5WWJ1	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.970
A0A194YRP1	C5X0P0_SORBI	A0A194YRP1	C5X0P0	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Brix domain-containing protein.	0.828
A0A194YRP1	C5X769_SORBI	A0A194YRP1	C5X769	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.731
A0A194YRP1	C5X8H8_SORBI	A0A194YRP1	C5X8H8	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Uncharacterized protein.	0.955
A0A194YRP1	C5X9C7_SORBI	A0A194YRP1	C5X9C7	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	WD_REPEATS_REGION domain-containing protein.	0.967
A0A194YRP1	C5XD79_SORBI	A0A194YRP1	C5XD79	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.	0.970
A0A194YRP1	C5XGC8_SORBI	A0A194YRP1	C5XGC8	SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.	Protein MAK16 homolog; Belongs to the MAK16 family.	0.945

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