(15 nodes) Aromatic amino acid lyase, and trans-cinnamate-CoA ligase activity network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Z5RH27	Hydrolase_4 domain-containing protein. (311 aa)
	A0A1Z5S6P3	Uncharacterized protein. (557 aa)
	C5XJK6_SORBI	Uncharacterized protein. (605 aa)
	C5XN98_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (505 aa)
	C5XXT8_SORBI	Phenylalanine ammonia-lyase. (704 aa)
	C5XXT9_SORBI	Phenylalanine ammonia-lyase. (718 aa)
	C5XXU0_SORBI	Phenylalanine ammonia-lyase. (714 aa)
	C5XXU3_SORBI	Phenylalanine ammonia-lyase. (714 aa)
	C5Y0F9_SORBI	Uncharacterized protein. (566 aa)
	C5Y145_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (530 aa)
	C5YCD6_SORBI	Phenylalanine ammonia-lyase. (703 aa)
	C5YJI8_SORBI	Uncharacterized protein. (571 aa)
	C5YLR0_SORBI	Uncharacterized protein. (552 aa)
	C5YWV2_SORBI	Hydrolase_4 domain-containing protein. (353 aa)
	C4H	Cinnamic acid 4-hydroxylase; Belongs to the cytochrome P450 family. (501 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1Z5RH27	A0A1Z5S6P3	A0A1Z5RH27	A0A1Z5S6P3	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.840
A0A1Z5RH27	C4H	A0A1Z5RH27	Q94IP1	Hydrolase_4 domain-containing protein.	Cinnamic acid 4-hydroxylase; Belongs to the cytochrome P450 family.	0.755
A0A1Z5RH27	C5XJK6_SORBI	A0A1Z5RH27	C5XJK6	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.842
A0A1Z5RH27	C5XXT8_SORBI	A0A1Z5RH27	C5XXT8	Hydrolase_4 domain-containing protein.	Phenylalanine ammonia-lyase.	0.715
A0A1Z5RH27	C5XXT9_SORBI	A0A1Z5RH27	C5XXT9	Hydrolase_4 domain-containing protein.	Phenylalanine ammonia-lyase.	0.715
A0A1Z5RH27	C5XXU0_SORBI	A0A1Z5RH27	C5XXU0	Hydrolase_4 domain-containing protein.	Phenylalanine ammonia-lyase.	0.715
A0A1Z5RH27	C5XXU3_SORBI	A0A1Z5RH27	C5XXU3	Hydrolase_4 domain-containing protein.	Phenylalanine ammonia-lyase.	0.715
A0A1Z5RH27	C5Y0F9_SORBI	A0A1Z5RH27	C5Y0F9	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.829
A0A1Z5RH27	C5YCD6_SORBI	A0A1Z5RH27	C5YCD6	Hydrolase_4 domain-containing protein.	Phenylalanine ammonia-lyase.	0.715
A0A1Z5RH27	C5YJI8_SORBI	A0A1Z5RH27	C5YJI8	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.804
A0A1Z5RH27	C5YLR0_SORBI	A0A1Z5RH27	C5YLR0	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.804
A0A1Z5S6P3	A0A1Z5RH27	A0A1Z5S6P3	A0A1Z5RH27	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.840
A0A1Z5S6P3	C4H	A0A1Z5S6P3	Q94IP1	Uncharacterized protein.	Cinnamic acid 4-hydroxylase; Belongs to the cytochrome P450 family.	0.918
A0A1Z5S6P3	C5XN98_SORBI	A0A1Z5S6P3	C5XN98	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.907
A0A1Z5S6P3	C5XXT8_SORBI	A0A1Z5S6P3	C5XXT8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.886
A0A1Z5S6P3	C5XXT9_SORBI	A0A1Z5S6P3	C5XXT9	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.912
A0A1Z5S6P3	C5XXU0_SORBI	A0A1Z5S6P3	C5XXU0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.881
A0A1Z5S6P3	C5XXU3_SORBI	A0A1Z5S6P3	C5XXU3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.881
A0A1Z5S6P3	C5Y145_SORBI	A0A1Z5S6P3	C5Y145	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.895
A0A1Z5S6P3	C5YCD6_SORBI	A0A1Z5S6P3	C5YCD6	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.886

page 1 of 9

Server load: medium (44%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About