(5 nodes) Mixed, incl. NatB complex, and DESIGUAL/Modifying wall lignin-1/2 network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1W0W1U6	Uncharacterized protein. (142 aa)
	A0A1Z5RKL0	GRAS domain-containing protein; Belongs to the GRAS family. (674 aa)
	C5WW62_SORBI	Uncharacterized protein. (291 aa)
	C5XX09_SORBI	Uncharacterized protein. (163 aa)
	C5YZ17_SORBI	Uncharacterized protein. (195 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1W0W1U6	A0A1Z5RKL0	A0A1W0W1U6	A0A1Z5RKL0	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.529
A0A1W0W1U6	C5WW62_SORBI	A0A1W0W1U6	C5WW62	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A1W0W1U6	C5XX09_SORBI	A0A1W0W1U6	C5XX09	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A1W0W1U6	C5YZ17_SORBI	A0A1W0W1U6	C5YZ17	Uncharacterized protein.	Uncharacterized protein.	0.534
A0A1Z5RKL0	A0A1W0W1U6	A0A1Z5RKL0	A0A1W0W1U6	GRAS domain-containing protein; Belongs to the GRAS family.	Uncharacterized protein.	0.529
A0A1Z5RKL0	C5WW62_SORBI	A0A1Z5RKL0	C5WW62	GRAS domain-containing protein; Belongs to the GRAS family.	Uncharacterized protein.	0.535
A0A1Z5RKL0	C5XX09_SORBI	A0A1Z5RKL0	C5XX09	GRAS domain-containing protein; Belongs to the GRAS family.	Uncharacterized protein.	0.501
A0A1Z5RKL0	C5YZ17_SORBI	A0A1Z5RKL0	C5YZ17	GRAS domain-containing protein; Belongs to the GRAS family.	Uncharacterized protein.	0.512
C5WW62_SORBI	A0A1W0W1U6	C5WW62	A0A1W0W1U6	Uncharacterized protein.	Uncharacterized protein.	0.540
C5WW62_SORBI	A0A1Z5RKL0	C5WW62	A0A1Z5RKL0	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.535
C5WW62_SORBI	C5XX09_SORBI	C5WW62	C5XX09	Uncharacterized protein.	Uncharacterized protein.	0.520
C5WW62_SORBI	C5YZ17_SORBI	C5WW62	C5YZ17	Uncharacterized protein.	Uncharacterized protein.	0.530
C5XX09_SORBI	A0A1W0W1U6	C5XX09	A0A1W0W1U6	Uncharacterized protein.	Uncharacterized protein.	0.519
C5XX09_SORBI	A0A1Z5RKL0	C5XX09	A0A1Z5RKL0	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.501
C5XX09_SORBI	C5WW62_SORBI	C5XX09	C5WW62	Uncharacterized protein.	Uncharacterized protein.	0.520
C5XX09_SORBI	C5YZ17_SORBI	C5XX09	C5YZ17	Uncharacterized protein.	Uncharacterized protein.	0.501
C5YZ17_SORBI	A0A1W0W1U6	C5YZ17	A0A1W0W1U6	Uncharacterized protein.	Uncharacterized protein.	0.534
C5YZ17_SORBI	A0A1Z5RKL0	C5YZ17	A0A1Z5RKL0	Uncharacterized protein.	GRAS domain-containing protein; Belongs to the GRAS family.	0.512
C5YZ17_SORBI	C5WW62_SORBI	C5YZ17	C5WW62	Uncharacterized protein.	Uncharacterized protein.	0.530
C5YZ17_SORBI	C5XX09_SORBI	C5YZ17	C5XX09	Uncharacterized protein.	Uncharacterized protein.	0.501

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