(18 nodes) Mixed, incl. tRNA 3-end processing, and Mitochondrial RNA 3-end processing network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PBN4	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (595 aa)
	A0A1B6PBP4	Exonuclease domain-containing protein. (599 aa)
	A0A1B6PKF1	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. (542 aa)
	A0A1B6PLD9	Uncharacterized protein. (728 aa)
	A0A1B6Q972	S1 motif domain-containing protein. (885 aa)
	A0A1B6QR70	Uncharacterized protein. (489 aa)
	A0A1W0W5J5	Lactamase_B domain-containing protein. (444 aa)
	A0A1Z5RFB3	Exonuclease domain-containing protein. (499 aa)
	A0A1Z5RM43	Lactamase_B domain-containing protein. (315 aa)
	A0A1Z5RQ52	Str_synth domain-containing protein. (346 aa)
	A0A1Z5S505	Uncharacterized protein. (634 aa)
	A0A1Z5S8F8	Str_synth domain-containing protein. (443 aa)
	C5WRH8_SORBI	Uncharacterized protein. (291 aa)
	C5XJM3_SORBI	Uncharacterized protein. (932 aa)
	C5XXP5_SORBI	S1 motif domain-containing protein. (983 aa)
	C5XZI2_SORBI	Lactamase_B domain-containing protein. (315 aa)
	C5Y140_SORBI	Exonuclease domain-containing protein. (246 aa)
	C5Z1R9_SORBI	Exonuclease domain-containing protein. (330 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PBN4	C5Y140_SORBI	A0A1B6PBN4	C5Y140	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Exonuclease domain-containing protein.	0.452
A0A1B6PBP4	A0A1Z5RFB3	A0A1B6PBP4	A0A1Z5RFB3	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.909
A0A1B6PBP4	C5Y140_SORBI	A0A1B6PBP4	C5Y140	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.955
A0A1B6PBP4	C5Z1R9_SORBI	A0A1B6PBP4	C5Z1R9	Exonuclease domain-containing protein.	Exonuclease domain-containing protein.	0.521
A0A1B6PKF1	C5Y140_SORBI	A0A1B6PKF1	C5Y140	Uncharacterized protein; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.	Exonuclease domain-containing protein.	0.452
A0A1B6PLD9	A0A1B6Q972	A0A1B6PLD9	A0A1B6Q972	Uncharacterized protein.	S1 motif domain-containing protein.	0.571
A0A1B6PLD9	A0A1W0W5J5	A0A1B6PLD9	A0A1W0W5J5	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.483
A0A1B6PLD9	A0A1Z5RM43	A0A1B6PLD9	A0A1Z5RM43	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.483
A0A1B6PLD9	A0A1Z5S505	A0A1B6PLD9	A0A1Z5S505	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A1B6PLD9	C5XJM3_SORBI	A0A1B6PLD9	C5XJM3	Uncharacterized protein.	Uncharacterized protein.	0.635
A0A1B6PLD9	C5XXP5_SORBI	A0A1B6PLD9	C5XXP5	Uncharacterized protein.	S1 motif domain-containing protein.	0.571
A0A1B6PLD9	C5XZI2_SORBI	A0A1B6PLD9	C5XZI2	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.483
A0A1B6Q972	A0A1B6PLD9	A0A1B6Q972	A0A1B6PLD9	S1 motif domain-containing protein.	Uncharacterized protein.	0.571
A0A1B6Q972	A0A1Z5S505	A0A1B6Q972	A0A1Z5S505	S1 motif domain-containing protein.	Uncharacterized protein.	0.571
A0A1B6Q972	C5XXP5_SORBI	A0A1B6Q972	C5XXP5	S1 motif domain-containing protein.	S1 motif domain-containing protein.	0.910
A0A1B6QR70	A0A1W0W5J5	A0A1B6QR70	A0A1W0W5J5	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.741
A0A1B6QR70	A0A1Z5RM43	A0A1B6QR70	A0A1Z5RM43	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.741
A0A1B6QR70	C5XJM3_SORBI	A0A1B6QR70	C5XJM3	Uncharacterized protein.	Uncharacterized protein.	0.874
A0A1B6QR70	C5XZI2_SORBI	A0A1B6QR70	C5XZI2	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.741
A0A1W0W5J5	A0A1B6PLD9	A0A1W0W5J5	A0A1B6PLD9	Lactamase_B domain-containing protein.	Uncharacterized protein.	0.483

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