(22 nodes) Mixed, incl. WEB family, and Transverse filament network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6P781	Uncharacterized protein. (752 aa)
	A0A1B6PKZ6	rRNA N-glycosidase. (1197 aa)
	A0A1B6PL96	Uncharacterized protein. (865 aa)
	A0A1B6Q6V5	Uncharacterized protein. (514 aa)
	A0A1B6QFJ5	Uncharacterized protein. (825 aa)
	A0A1B6QIR2	Uncharacterized protein. (1057 aa)
	A0A1B6QQF3	rRNA N-glycosidase. (791 aa)
	A0A1W0VVQ9	Uncharacterized protein. (841 aa)
	A0A1Z5R0I7	Uncharacterized protein. (616 aa)
	A0A1Z5S806	Uncharacterized protein. (953 aa)
	C5WXM2_SORBI	Uncharacterized protein. (784 aa)
	C5X9C6_SORBI	Uncharacterized protein. (804 aa)
	C5XAJ9_SORBI	Uncharacterized protein. (617 aa)
	C5XEH0_SORBI	Uncharacterized protein. (629 aa)
	C5XHF8_SORBI	Uncharacterized protein. (623 aa)
	C5XQ09_SORBI	Uncharacterized protein. (693 aa)
	C5Y0R4_SORBI	Uncharacterized protein. (763 aa)
	C5Y5Q3_SORBI	Uncharacterized protein. (945 aa)
	C5YF10_SORBI	Uncharacterized protein. (759 aa)
	C5YIG9_SORBI	Uncharacterized protein. (453 aa)
	C5Z120_SORBI	NAB domain-containing protein. (638 aa)
	Sb0011s005460	Uncharacterized protein. (651 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6P781	A0A1B6Q6V5	A0A1B6P781	A0A1B6Q6V5	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A1B6P781	A0A1B6QFJ5	A0A1B6P781	A0A1B6QFJ5	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A1B6P781	A0A1Z5R0I7	A0A1B6P781	A0A1Z5R0I7	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A1B6P781	A0A1Z5S806	A0A1B6P781	A0A1Z5S806	Uncharacterized protein.	Uncharacterized protein.	0.493
A0A1B6P781	C5WXM2_SORBI	A0A1B6P781	C5WXM2	Uncharacterized protein.	Uncharacterized protein.	0.417
A0A1B6P781	C5XEH0_SORBI	A0A1B6P781	C5XEH0	Uncharacterized protein.	Uncharacterized protein.	0.400
A0A1B6P781	C5XHF8_SORBI	A0A1B6P781	C5XHF8	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A1B6P781	C5XQ09_SORBI	A0A1B6P781	C5XQ09	Uncharacterized protein.	Uncharacterized protein.	0.472
A0A1B6P781	C5YF10_SORBI	A0A1B6P781	C5YF10	Uncharacterized protein.	Uncharacterized protein.	0.448
A0A1B6PKZ6	A0A1B6Q6V5	A0A1B6PKZ6	A0A1B6Q6V5	rRNA N-glycosidase.	Uncharacterized protein.	0.422
A0A1B6PKZ6	A0A1B6QIR2	A0A1B6PKZ6	A0A1B6QIR2	rRNA N-glycosidase.	Uncharacterized protein.	0.427
A0A1B6PKZ6	A0A1Z5R0I7	A0A1B6PKZ6	A0A1Z5R0I7	rRNA N-glycosidase.	Uncharacterized protein.	0.418
A0A1B6PL96	A0A1B6Q6V5	A0A1B6PL96	A0A1B6Q6V5	Uncharacterized protein.	Uncharacterized protein.	0.411
A0A1B6PL96	A0A1B6QFJ5	A0A1B6PL96	A0A1B6QFJ5	Uncharacterized protein.	Uncharacterized protein.	0.422
A0A1B6PL96	A0A1Z5R0I7	A0A1B6PL96	A0A1Z5R0I7	Uncharacterized protein.	Uncharacterized protein.	0.500
A0A1B6PL96	C5WXM2_SORBI	A0A1B6PL96	C5WXM2	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A1B6PL96	C5Y0R4_SORBI	A0A1B6PL96	C5Y0R4	Uncharacterized protein.	Uncharacterized protein.	0.427
A0A1B6PL96	Sb0011s005460	A0A1B6PL96	C6JRM9	Uncharacterized protein.	Uncharacterized protein.	0.412
A0A1B6Q6V5	A0A1B6P781	A0A1B6Q6V5	A0A1B6P781	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A1B6Q6V5	A0A1B6PKZ6	A0A1B6Q6V5	A0A1B6PKZ6	Uncharacterized protein.	rRNA N-glycosidase.	0.422

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