(12 nodes) Mixed, incl. Wound-induced protein, and Defensin, plant network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1W0W383	Uncharacterized protein. (100 aa)
	C5WWF3_SORBI	Uncharacterized protein. (93 aa)
	C5X5F2_SORBI	Uncharacterized protein. (116 aa)
	C5XK65_SORBI	Uncharacterized protein. (98 aa)
	C5XML3_SORBI	Uncharacterized protein. (174 aa)
	C5Y0J0_SORBI	Knot1 domain-containing protein; Belongs to the DEFL family. (81 aa)
	C5Y3Q9_SORBI	Uncharacterized protein. (191 aa)
	C5YA98_SORBI	Uncharacterized protein. (156 aa)
	C5YCR7_SORBI	Knot1 domain-containing protein; Belongs to the DEFL family. (77 aa)
	C5YGQ2_SORBI	Uncharacterized protein. (82 aa)
	C5YGQ3_SORBI	Uncharacterized protein. (89 aa)
	C5YGQ4_SORBI	Uncharacterized protein. (82 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1W0W383	C5WWF3_SORBI	A0A1W0W383	C5WWF3	Uncharacterized protein.	Uncharacterized protein.	0.538
A0A1W0W383	C5X5F2_SORBI	A0A1W0W383	C5X5F2	Uncharacterized protein.	Uncharacterized protein.	0.544
A0A1W0W383	C5XK65_SORBI	A0A1W0W383	C5XK65	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A1W0W383	C5XML3_SORBI	A0A1W0W383	C5XML3	Uncharacterized protein.	Uncharacterized protein.	0.534
A0A1W0W383	C5Y0J0_SORBI	A0A1W0W383	C5Y0J0	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.515
A0A1W0W383	C5Y3Q9_SORBI	A0A1W0W383	C5Y3Q9	Uncharacterized protein.	Uncharacterized protein.	0.531
A0A1W0W383	C5YA98_SORBI	A0A1W0W383	C5YA98	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A1W0W383	C5YCR7_SORBI	A0A1W0W383	C5YCR7	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.516
A0A1W0W383	C5YGQ2_SORBI	A0A1W0W383	C5YGQ2	Uncharacterized protein.	Uncharacterized protein.	0.541
A0A1W0W383	C5YGQ3_SORBI	A0A1W0W383	C5YGQ3	Uncharacterized protein.	Uncharacterized protein.	0.540
A0A1W0W383	C5YGQ4_SORBI	A0A1W0W383	C5YGQ4	Uncharacterized protein.	Uncharacterized protein.	0.541
C5WWF3_SORBI	A0A1W0W383	C5WWF3	A0A1W0W383	Uncharacterized protein.	Uncharacterized protein.	0.538
C5WWF3_SORBI	C5X5F2_SORBI	C5WWF3	C5X5F2	Uncharacterized protein.	Uncharacterized protein.	0.529
C5WWF3_SORBI	C5XK65_SORBI	C5WWF3	C5XK65	Uncharacterized protein.	Uncharacterized protein.	0.532
C5WWF3_SORBI	C5XML3_SORBI	C5WWF3	C5XML3	Uncharacterized protein.	Uncharacterized protein.	0.530
C5WWF3_SORBI	C5Y0J0_SORBI	C5WWF3	C5Y0J0	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.501
C5WWF3_SORBI	C5Y3Q9_SORBI	C5WWF3	C5Y3Q9	Uncharacterized protein.	Uncharacterized protein.	0.539
C5WWF3_SORBI	C5YA98_SORBI	C5WWF3	C5YA98	Uncharacterized protein.	Uncharacterized protein.	0.529
C5WWF3_SORBI	C5YCR7_SORBI	C5WWF3	C5YCR7	Uncharacterized protein.	Knot1 domain-containing protein; Belongs to the DEFL family.	0.494
C5WWF3_SORBI	C5YGQ2_SORBI	C5WWF3	C5YGQ2	Uncharacterized protein.	Uncharacterized protein.	0.536

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