(10 nodes) Brr2, N-terminal helicase PWI domain, and Spliceosomal tri-snRNP complex assembly network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6QH23	Uncharacterized protein. (2204 aa)
	A0A1W0W7F3	Uncharacterized protein. (830 aa)
	C5X2G0_SORBI	Uncharacterized protein. (152 aa)
	C5X3C4_SORBI	Uncharacterized protein. (2182 aa)
	C5XM20_SORBI	U1-type domain-containing protein. (201 aa)
	C5XRK9_SORBI	Uncharacterized protein. (2173 aa)
	C5YDJ9_SORBI	Nop domain-containing protein. (484 aa)
	C5YKW0_SORBI	Uncharacterized protein. (142 aa)
	C5YP81_SORBI	TPR_REGION domain-containing protein. (963 aa)
	C5YWH8_SORBI	PRP1_N domain-containing protein. (758 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6QH23	A0A1W0W7F3	A0A1B6QH23	A0A1W0W7F3	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1B6QH23	C5X2G0_SORBI	A0A1B6QH23	C5X2G0	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A1B6QH23	C5X3C4_SORBI	A0A1B6QH23	C5X3C4	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1B6QH23	C5XM20_SORBI	A0A1B6QH23	C5XM20	Uncharacterized protein.	U1-type domain-containing protein.	0.759
A0A1B6QH23	C5XRK9_SORBI	A0A1B6QH23	C5XRK9	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1B6QH23	C5YDJ9_SORBI	A0A1B6QH23	C5YDJ9	Uncharacterized protein.	Nop domain-containing protein.	0.849
A0A1B6QH23	C5YKW0_SORBI	A0A1B6QH23	C5YKW0	Uncharacterized protein.	Uncharacterized protein.	0.916
A0A1B6QH23	C5YP81_SORBI	A0A1B6QH23	C5YP81	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.933
A0A1B6QH23	C5YWH8_SORBI	A0A1B6QH23	C5YWH8	Uncharacterized protein.	PRP1_N domain-containing protein.	0.933
A0A1W0W7F3	A0A1B6QH23	A0A1W0W7F3	A0A1B6QH23	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1W0W7F3	C5X2G0_SORBI	A0A1W0W7F3	C5X2G0	Uncharacterized protein.	Uncharacterized protein.	0.977
A0A1W0W7F3	C5X3C4_SORBI	A0A1W0W7F3	C5X3C4	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1W0W7F3	C5XM20_SORBI	A0A1W0W7F3	C5XM20	Uncharacterized protein.	U1-type domain-containing protein.	0.970
A0A1W0W7F3	C5XRK9_SORBI	A0A1W0W7F3	C5XRK9	Uncharacterized protein.	Uncharacterized protein.	0.931
A0A1W0W7F3	C5YDJ9_SORBI	A0A1W0W7F3	C5YDJ9	Uncharacterized protein.	Nop domain-containing protein.	0.983
A0A1W0W7F3	C5YKW0_SORBI	A0A1W0W7F3	C5YKW0	Uncharacterized protein.	Uncharacterized protein.	0.977
A0A1W0W7F3	C5YP81_SORBI	A0A1W0W7F3	C5YP81	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.985
A0A1W0W7F3	C5YWH8_SORBI	A0A1W0W7F3	C5YWH8	Uncharacterized protein.	PRP1_N domain-containing protein.	0.985
C5X2G0_SORBI	A0A1B6QH23	C5X2G0	A0A1B6QH23	Uncharacterized protein.	Uncharacterized protein.	0.916
C5X2G0_SORBI	A0A1W0W7F3	C5X2G0	A0A1W0W7F3	Uncharacterized protein.	Uncharacterized protein.	0.977

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