(34 nodes) Mixed, incl. Regulator of chromosome condensation, RCC1, and QUIRKY-like, third C2 domain network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YRD8	Uncharacterized protein. (425 aa)
	A0A1B6PCV4	TLC domain-containing protein. (262 aa)
	A0A1B6PLN9	Uncharacterized protein. (537 aa)
	A0A1B6PMV0	Uncharacterized protein. (1067 aa)
	A0A1B6PN81	Uncharacterized protein. (269 aa)
	A0A1B6Q8F4	Uncharacterized protein. (912 aa)
	A0A1B6Q9J4	TLC domain-containing protein. (238 aa)
	A0A1B6QAF1	Uncharacterized protein. (399 aa)
	A0A1B6QGW5	Uncharacterized protein. (318 aa)
	A0A1B6QQ89	Uncharacterized protein. (428 aa)
	A0A1Z5RF71	Uncharacterized protein. (472 aa)
	A0A1Z5RG18	Uncharacterized protein. (1027 aa)
	A0A1Z5RPD2	Uncharacterized protein. (1073 aa)
	A0A1Z5SAN3	NAC domain-containing protein. (689 aa)
	C5WM65_SORBI	F-box domain-containing protein. (437 aa)
	C5WM95_SORBI	Uncharacterized protein. (444 aa)
	C5WP95_SORBI	ABC transporter domain-containing protein. (796 aa)
	C5WW26_SORBI	TLC domain-containing protein. (255 aa)
	C5WWU3_SORBI	Uncharacterized protein. (438 aa)
	C5X428_SORBI	Uncharacterized protein. (269 aa)
	C5X8K8_SORBI	Uncharacterized protein. (1006 aa)
	C5XHK2_SORBI	Uncharacterized protein. (1056 aa)
	C5XP26_SORBI	ABC transporter domain-containing protein. (745 aa)
	C5XVU0_SORBI	Uncharacterized protein. (1014 aa)
	C5XX40_SORBI	Uncharacterized protein. (535 aa)
	C5Y1F0_SORBI	C2 domain-containing protein. (776 aa)
	C5Y5V4_SORBI	Uncharacterized protein. (446 aa)
	C5YB03_SORBI	Uncharacterized protein. (1064 aa)
	C5YC24_SORBI	PG_binding_1 domain-containing protein. (367 aa)
	C5YP89_SORBI	Uncharacterized protein. (204 aa)
	C5YUX6_SORBI	Uncharacterized protein. (1020 aa)
	C5YY28_SORBI	Uncharacterized protein. (916 aa)
	C5Z635_SORBI	Uncharacterized protein. (813 aa)
	C5Z640_SORBI	Uncharacterized protein. (775 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YRD8	A0A1B6PCV4	A0A194YRD8	A0A1B6PCV4	Uncharacterized protein.	TLC domain-containing protein.	0.484
A0A194YRD8	A0A1B6Q8F4	A0A194YRD8	A0A1B6Q8F4	Uncharacterized protein.	Uncharacterized protein.	0.437
A0A194YRD8	A0A1B6Q9J4	A0A194YRD8	A0A1B6Q9J4	Uncharacterized protein.	TLC domain-containing protein.	0.487
A0A194YRD8	A0A1B6QAF1	A0A194YRD8	A0A1B6QAF1	Uncharacterized protein.	Uncharacterized protein.	0.435
A0A194YRD8	A0A1B6QGW5	A0A194YRD8	A0A1B6QGW5	Uncharacterized protein.	Uncharacterized protein.	0.427
A0A194YRD8	C5WW26_SORBI	A0A194YRD8	C5WW26	Uncharacterized protein.	TLC domain-containing protein.	0.488
A0A194YRD8	C5XHK2_SORBI	A0A194YRD8	C5XHK2	Uncharacterized protein.	Uncharacterized protein.	0.413
A0A194YRD8	C5YB03_SORBI	A0A194YRD8	C5YB03	Uncharacterized protein.	Uncharacterized protein.	0.428
A0A194YRD8	C5YP89_SORBI	A0A194YRD8	C5YP89	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A194YRD8	C5YUX6_SORBI	A0A194YRD8	C5YUX6	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A194YRD8	C5YY28_SORBI	A0A194YRD8	C5YY28	Uncharacterized protein.	Uncharacterized protein.	0.442
A0A194YRD8	C5Z635_SORBI	A0A194YRD8	C5Z635	Uncharacterized protein.	Uncharacterized protein.	0.430
A0A1B6PCV4	A0A194YRD8	A0A1B6PCV4	A0A194YRD8	TLC domain-containing protein.	Uncharacterized protein.	0.484
A0A1B6PCV4	A0A1B6PN81	A0A1B6PCV4	A0A1B6PN81	TLC domain-containing protein.	Uncharacterized protein.	0.430
A0A1B6PCV4	A0A1B6Q8F4	A0A1B6PCV4	A0A1B6Q8F4	TLC domain-containing protein.	Uncharacterized protein.	0.470
A0A1B6PCV4	A0A1B6QAF1	A0A1B6PCV4	A0A1B6QAF1	TLC domain-containing protein.	Uncharacterized protein.	0.501
A0A1B6PCV4	A0A1B6QGW5	A0A1B6PCV4	A0A1B6QGW5	TLC domain-containing protein.	Uncharacterized protein.	0.506
A0A1B6PCV4	A0A1B6QQ89	A0A1B6PCV4	A0A1B6QQ89	TLC domain-containing protein.	Uncharacterized protein.	0.472
A0A1B6PCV4	A0A1Z5RF71	A0A1B6PCV4	A0A1Z5RF71	TLC domain-containing protein.	Uncharacterized protein.	0.445
A0A1B6PCV4	A0A1Z5RG18	A0A1B6PCV4	A0A1Z5RG18	TLC domain-containing protein.	Uncharacterized protein.	0.449

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