(49 nodes) Prp19 complex, and mRNA Splicing - Major Pathway network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YGX6	Uncharacterized protein. (592 aa)
	A0A194YQD0	COX assembly mitochondrial protein. (119 aa)
	A0A1B6P826	FHA domain-containing protein. (538 aa)
	A0A1B6P966	Uncharacterized protein. (145 aa)
	A0A1B6PJI0	WD_REPEATS_REGION domain-containing protein. (479 aa)
	A0A1B6PKD7	Uncharacterized protein. (166 aa)
	A0A1B6Q4N6	Cwf21 domain-containing protein. (141 aa)
	A0A1B6Q730	Uncharacterized protein. (145 aa)
	A0A1B6QEE4	Uncharacterized protein. (1285 aa)
	A0A1B6QKE9	Uncharacterized protein. (526 aa)
	A0A1W0VRZ4	SKIP_SNW domain-containing protein. (494 aa)
	A0A1W0VY71	Uncharacterized protein. (306 aa)
	A0A1W0W0I6	Uncharacterized protein. (773 aa)
	A0A1Z5R4N0	MI domain-containing protein. (553 aa)
	A0A1Z5RQL4	DUF1716 domain-containing protein. (512 aa)
	A0A1Z5S9K2	Uncharacterized protein. (1513 aa)
	C5WPP1_SORBI	Uncharacterized protein. (722 aa)
	C5WU44_SORBI	Uncharacterized protein. (298 aa)
	C5WXK8_SORBI	WD_REPEATS_REGION domain-containing protein. (572 aa)
	C5WZE4_SORBI	WD_REPEATS_REGION domain-containing protein. (628 aa)
	C5X1A0_SORBI	Uncharacterized protein. (764 aa)
	C5X3Z7_SORBI	Uncharacterized protein. (932 aa)
	C5XF95_SORBI	MI domain-containing protein. (792 aa)
	C5XGI1_SORBI	Uncharacterized protein. (254 aa)
	C5XGY3_SORBI	Uncharacterized protein. (983 aa)
	C5XKF0_SORBI	Uncharacterized protein. (231 aa)
	C5XNU7_SORBI	PPIase cyclophilin-type domain-containing protein. (513 aa)
	C5XPH3_SORBI	Uncharacterized protein. (331 aa)
	C5XSR7_SORBI	SKIP_SNW domain-containing protein. (609 aa)
	C5XX61_SORBI	Uncharacterized protein. (309 aa)
	C5XZF5_SORBI	Uncharacterized protein. (330 aa)
	C5Y082_SORBI	Uncharacterized protein. (491 aa)
	C5YD66_SORBI	MI domain-containing protein. (539 aa)
	C5YIV0_SORBI	Uncharacterized protein. (225 aa)
	C5YJ72_SORBI	Cir_N domain-containing protein. (540 aa)
	C5YMK6_SORBI	Slu7 domain-containing protein. (535 aa)
	C5YN67_SORBI	Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (164 aa)
	C5YNT7_SORBI	Uncharacterized protein. (986 aa)
	C5YQ06_SORBI	Poly [ADP-ribose] polymerase. (904 aa)
	C5YS43_SORBI	WD_REPEATS_REGION domain-containing protein. (446 aa)
	C5YXW0_SORBI	Uncharacterized protein. (720 aa)
	C5YYT6_SORBI	Uncharacterized protein. (698 aa)
	C5Z259_SORBI	Uncharacterized protein. (109 aa)
	C5Z262_SORBI	Uncharacterized protein. (230 aa)
	C5Z2U3_SORBI	Uncharacterized protein. (505 aa)
	C5Z502_SORBI	Uncharacterized protein. (491 aa)
	C5Z7G6_SORBI	Uncharacterized protein. (783 aa)
	C5Z9E4_SORBI	Uncharacterized protein. (471 aa)
	C5Z9E6_SORBI	Uncharacterized protein. (353 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YGX6	A0A194YQD0	A0A194YGX6	A0A194YQD0	Uncharacterized protein.	COX assembly mitochondrial protein.	0.898
A0A194YGX6	A0A1B6P826	A0A194YGX6	A0A1B6P826	Uncharacterized protein.	FHA domain-containing protein.	0.992
A0A194YGX6	A0A1B6P966	A0A194YGX6	A0A1B6P966	Uncharacterized protein.	Uncharacterized protein.	0.865
A0A194YGX6	A0A1B6PJI0	A0A194YGX6	A0A1B6PJI0	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.897
A0A194YGX6	A0A1B6PKD7	A0A194YGX6	A0A1B6PKD7	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A194YGX6	A0A1B6Q4N6	A0A194YGX6	A0A1B6Q4N6	Uncharacterized protein.	Cwf21 domain-containing protein.	0.898
A0A194YGX6	A0A1B6Q730	A0A194YGX6	A0A1B6Q730	Uncharacterized protein.	Uncharacterized protein.	0.865
A0A194YGX6	A0A1B6QEE4	A0A194YGX6	A0A1B6QEE4	Uncharacterized protein.	Uncharacterized protein.	0.864
A0A194YGX6	A0A1B6QKE9	A0A194YGX6	A0A1B6QKE9	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A194YGX6	A0A1W0VRZ4	A0A194YGX6	A0A1W0VRZ4	Uncharacterized protein.	SKIP_SNW domain-containing protein.	0.910
A0A194YGX6	A0A1W0VY71	A0A194YGX6	A0A1W0VY71	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A194YGX6	A0A1W0W0I6	A0A194YGX6	A0A1W0W0I6	Uncharacterized protein.	Uncharacterized protein.	0.865
A0A194YGX6	A0A1Z5R4N0	A0A194YGX6	A0A1Z5R4N0	Uncharacterized protein.	MI domain-containing protein.	0.933
A0A194YGX6	A0A1Z5RQL4	A0A194YGX6	A0A1Z5RQL4	Uncharacterized protein.	DUF1716 domain-containing protein.	0.736
A0A194YGX6	A0A1Z5S9K2	A0A194YGX6	A0A1Z5S9K2	Uncharacterized protein.	Uncharacterized protein.	0.707
A0A194YGX6	C5WPP1_SORBI	A0A194YGX6	C5WPP1	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A194YGX6	C5WU44_SORBI	A0A194YGX6	C5WU44	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A194YGX6	C5WXK8_SORBI	A0A194YGX6	C5WXK8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.940
A0A194YGX6	C5WZE4_SORBI	A0A194YGX6	C5WZE4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.710
A0A194YGX6	C5X3Z7_SORBI	A0A194YGX6	C5X3Z7	Uncharacterized protein.	Uncharacterized protein.	0.916

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