(6 nodes) Mixed, incl. Cyclophilin-type peptidyl-prolyl cis-trans isomerase, cyclophilin A-like, and MIF4G-like, type 3 network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YGX6	Uncharacterized protein. (592 aa)
	A0A1B6P826	FHA domain-containing protein. (538 aa)
	C5WU44_SORBI	Uncharacterized protein. (298 aa)
	C5XNU7_SORBI	PPIase cyclophilin-type domain-containing protein. (513 aa)
	C5XZF5_SORBI	Uncharacterized protein. (330 aa)
	C5YD66_SORBI	MI domain-containing protein. (539 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YGX6	A0A1B6P826	A0A194YGX6	A0A1B6P826	Uncharacterized protein.	FHA domain-containing protein.	0.992
A0A194YGX6	C5WU44_SORBI	A0A194YGX6	C5WU44	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A194YGX6	C5XNU7_SORBI	A0A194YGX6	C5XNU7	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.957
A0A194YGX6	C5XZF5_SORBI	A0A194YGX6	C5XZF5	Uncharacterized protein.	Uncharacterized protein.	0.954
A0A194YGX6	C5YD66_SORBI	A0A194YGX6	C5YD66	Uncharacterized protein.	MI domain-containing protein.	0.933
A0A1B6P826	A0A194YGX6	A0A1B6P826	A0A194YGX6	FHA domain-containing protein.	Uncharacterized protein.	0.992
A0A1B6P826	C5WU44_SORBI	A0A1B6P826	C5WU44	FHA domain-containing protein.	Uncharacterized protein.	0.992
A0A1B6P826	C5XNU7_SORBI	A0A1B6P826	C5XNU7	FHA domain-containing protein.	PPIase cyclophilin-type domain-containing protein.	0.944
A0A1B6P826	C5XZF5_SORBI	A0A1B6P826	C5XZF5	FHA domain-containing protein.	Uncharacterized protein.	0.951
A0A1B6P826	C5YD66_SORBI	A0A1B6P826	C5YD66	FHA domain-containing protein.	MI domain-containing protein.	0.915
C5WU44_SORBI	A0A194YGX6	C5WU44	A0A194YGX6	Uncharacterized protein.	Uncharacterized protein.	0.993
C5WU44_SORBI	A0A1B6P826	C5WU44	A0A1B6P826	Uncharacterized protein.	FHA domain-containing protein.	0.992
C5WU44_SORBI	C5XNU7_SORBI	C5WU44	C5XNU7	Uncharacterized protein.	PPIase cyclophilin-type domain-containing protein.	0.948
C5WU44_SORBI	C5XZF5_SORBI	C5WU44	C5XZF5	Uncharacterized protein.	Uncharacterized protein.	0.949
C5WU44_SORBI	C5YD66_SORBI	C5WU44	C5YD66	Uncharacterized protein.	MI domain-containing protein.	0.900
C5XNU7_SORBI	A0A194YGX6	C5XNU7	A0A194YGX6	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.957
C5XNU7_SORBI	A0A1B6P826	C5XNU7	A0A1B6P826	PPIase cyclophilin-type domain-containing protein.	FHA domain-containing protein.	0.944
C5XNU7_SORBI	C5WU44_SORBI	C5XNU7	C5WU44	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.948
C5XNU7_SORBI	C5XZF5_SORBI	C5XNU7	C5XZF5	PPIase cyclophilin-type domain-containing protein.	Uncharacterized protein.	0.990
C5XNU7_SORBI	C5YD66_SORBI	C5XNU7	C5YD66	PPIase cyclophilin-type domain-containing protein.	MI domain-containing protein.	0.979

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