(11 nodes) Mixed, incl. R3H domain-containing protein 4, and Sin3 complex network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PA83	Uncharacterized protein. (1133 aa)
	A0A1B6QNK7	Uncharacterized protein. (422 aa)
	A0A1Z5RAG6	Uncharacterized protein. (788 aa)
	A0A1Z5RAJ7	R3H-assoc domain-containing protein. (128 aa)
	A0A1Z5RN99	Uncharacterized protein. (542 aa)
	C5X1S4_SORBI	Uncharacterized protein. (319 aa)
	C5XMG8_SORBI	AAI domain-containing protein. (111 aa)
	C5XNM5_SORBI	Uncharacterized protein. (642 aa)
	C5XWN3_SORBI	Uncharacterized protein. (600 aa)
	C5Y4K0_SORBI	R3H-assoc domain-containing protein. (246 aa)
	C5YDN1_SORBI	FPL domain-containing protein. (893 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PA83	A0A1Z5RAJ7	A0A1B6PA83	A0A1Z5RAJ7	Uncharacterized protein.	R3H-assoc domain-containing protein.	0.480
A0A1B6PA83	C5X1S4_SORBI	A0A1B6PA83	C5X1S4	Uncharacterized protein.	Uncharacterized protein.	0.481
A0A1B6PA83	C5Y4K0_SORBI	A0A1B6PA83	C5Y4K0	Uncharacterized protein.	R3H-assoc domain-containing protein.	0.444
A0A1B6QNK7	A0A1Z5RAJ7	A0A1B6QNK7	A0A1Z5RAJ7	Uncharacterized protein.	R3H-assoc domain-containing protein.	0.417
A0A1Z5RAG6	C5Y4K0_SORBI	A0A1Z5RAG6	C5Y4K0	Uncharacterized protein.	R3H-assoc domain-containing protein.	0.407
A0A1Z5RAJ7	A0A1B6PA83	A0A1Z5RAJ7	A0A1B6PA83	R3H-assoc domain-containing protein.	Uncharacterized protein.	0.480
A0A1Z5RAJ7	A0A1B6QNK7	A0A1Z5RAJ7	A0A1B6QNK7	R3H-assoc domain-containing protein.	Uncharacterized protein.	0.417
A0A1Z5RAJ7	C5X1S4_SORBI	A0A1Z5RAJ7	C5X1S4	R3H-assoc domain-containing protein.	Uncharacterized protein.	0.444
A0A1Z5RAJ7	C5XMG8_SORBI	A0A1Z5RAJ7	C5XMG8	R3H-assoc domain-containing protein.	AAI domain-containing protein.	0.474
A0A1Z5RAJ7	C5XNM5_SORBI	A0A1Z5RAJ7	C5XNM5	R3H-assoc domain-containing protein.	Uncharacterized protein.	0.456
C5X1S4_SORBI	A0A1B6PA83	C5X1S4	A0A1B6PA83	Uncharacterized protein.	Uncharacterized protein.	0.481
C5X1S4_SORBI	A0A1Z5RAJ7	C5X1S4	A0A1Z5RAJ7	Uncharacterized protein.	R3H-assoc domain-containing protein.	0.444
C5X1S4_SORBI	C5Y4K0_SORBI	C5X1S4	C5Y4K0	Uncharacterized protein.	R3H-assoc domain-containing protein.	0.418
C5XMG8_SORBI	A0A1Z5RAJ7	C5XMG8	A0A1Z5RAJ7	AAI domain-containing protein.	R3H-assoc domain-containing protein.	0.474
C5XNM5_SORBI	A0A1Z5RAJ7	C5XNM5	A0A1Z5RAJ7	Uncharacterized protein.	R3H-assoc domain-containing protein.	0.456
C5Y4K0_SORBI	A0A1B6PA83	C5Y4K0	A0A1B6PA83	R3H-assoc domain-containing protein.	Uncharacterized protein.	0.444
C5Y4K0_SORBI	A0A1Z5RAG6	C5Y4K0	A0A1Z5RAG6	R3H-assoc domain-containing protein.	Uncharacterized protein.	0.407
C5Y4K0_SORBI	C5X1S4_SORBI	C5Y4K0	C5X1S4	R3H-assoc domain-containing protein.	Uncharacterized protein.	0.418

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