(23 nodes) Osmotin/thaumatin-like superfamily network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YNT8	Uncharacterized protein. (126 aa)
	A0A1B6PPA1	Uncharacterized protein. (326 aa)
	A0A1W0W3G5	Uncharacterized protein. (226 aa)
	A0A1Z5R7F8	Uncharacterized protein. (191 aa)
	A0A1Z5R7K5	Uncharacterized protein. (188 aa)
	A0A1Z5RBM0	Uncharacterized protein. (281 aa)
	A0A1Z5RE52	Uncharacterized protein. (244 aa)
	C5WQD8_SORBI	Uncharacterized protein. (224 aa)
	C5X1F0_SORBI	Uncharacterized protein. (217 aa)
	C5X4F1_SORBI	Uncharacterized protein. (248 aa)
	C5X9J9_SORBI	Glutaredoxin domain-containing protein. (166 aa)
	C5XPM9_SORBI	Uncharacterized protein. (251 aa)
	C5Y8I2_SORBI	Uncharacterized protein. (260 aa)
	C5YBG7_SORBI	Uncharacterized protein. (255 aa)
	C5YPY2_SORBI	Uncharacterized protein. (227 aa)
	C5YPY7_SORBI	Uncharacterized protein. (244 aa)
	C5YSK1_SORBI	Uncharacterized protein. (172 aa)
	C5YSK2_SORBI	Uncharacterized protein. (177 aa)
	C5YSK3_SORBI	Uncharacterized protein. (176 aa)
	C5YSK4_SORBI	Uncharacterized protein. (174 aa)
	C5YSK5_SORBI	Uncharacterized protein. (176 aa)
	C5YSK6_SORBI	Uncharacterized protein. (176 aa)
	C5YSV2_SORBI	Uncharacterized protein. (174 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YNT8	A0A1W0W3G5	A0A194YNT8	A0A1W0W3G5	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A194YNT8	C5X1F0_SORBI	A0A194YNT8	C5X1F0	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A194YNT8	C5XPM9_SORBI	A0A194YNT8	C5XPM9	Uncharacterized protein.	Uncharacterized protein.	0.444
A0A194YNT8	C5Y8I2_SORBI	A0A194YNT8	C5Y8I2	Uncharacterized protein.	Uncharacterized protein.	0.417
A0A194YNT8	C5YBG7_SORBI	A0A194YNT8	C5YBG7	Uncharacterized protein.	Uncharacterized protein.	0.409
A0A194YNT8	C5YPY2_SORBI	A0A194YNT8	C5YPY2	Uncharacterized protein.	Uncharacterized protein.	0.426
A0A1B6PPA1	C5Y8I2_SORBI	A0A1B6PPA1	C5Y8I2	Uncharacterized protein.	Uncharacterized protein.	0.498
A0A1W0W3G5	A0A194YNT8	A0A1W0W3G5	A0A194YNT8	Uncharacterized protein.	Uncharacterized protein.	0.403
A0A1Z5R7K5	C5Y8I2_SORBI	A0A1Z5R7K5	C5Y8I2	Uncharacterized protein.	Uncharacterized protein.	0.497
C5X1F0_SORBI	A0A194YNT8	C5X1F0	A0A194YNT8	Uncharacterized protein.	Uncharacterized protein.	0.409
C5X1F0_SORBI	C5YSK2_SORBI	C5X1F0	C5YSK2	Uncharacterized protein.	Uncharacterized protein.	0.515
C5XPM9_SORBI	A0A194YNT8	C5XPM9	A0A194YNT8	Uncharacterized protein.	Uncharacterized protein.	0.444
C5Y8I2_SORBI	A0A194YNT8	C5Y8I2	A0A194YNT8	Uncharacterized protein.	Uncharacterized protein.	0.417
C5Y8I2_SORBI	A0A1B6PPA1	C5Y8I2	A0A1B6PPA1	Uncharacterized protein.	Uncharacterized protein.	0.498
C5Y8I2_SORBI	A0A1Z5R7K5	C5Y8I2	A0A1Z5R7K5	Uncharacterized protein.	Uncharacterized protein.	0.497
C5Y8I2_SORBI	C5YSK1_SORBI	C5Y8I2	C5YSK1	Uncharacterized protein.	Uncharacterized protein.	0.491
C5Y8I2_SORBI	C5YSK2_SORBI	C5Y8I2	C5YSK2	Uncharacterized protein.	Uncharacterized protein.	0.476
C5Y8I2_SORBI	C5YSK4_SORBI	C5Y8I2	C5YSK4	Uncharacterized protein.	Uncharacterized protein.	0.479
C5Y8I2_SORBI	C5YSK5_SORBI	C5Y8I2	C5YSK5	Uncharacterized protein.	Uncharacterized protein.	0.492
C5Y8I2_SORBI	C5YSK6_SORBI	C5Y8I2	C5YSK6	Uncharacterized protein.	Uncharacterized protein.	0.491

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