(11 nodes) RNAi-mediated antiviral immune response, and Piwi domain network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PN88	Uncharacterized protein; Belongs to the argonaute family. (1092 aa)
	A0A1B6QJK2	Uncharacterized protein. (778 aa)
	A0A1B6QQZ1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1929 aa)
	A0A1Z5RDX5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1665 aa)
	A0A1Z5RQS2	Uncharacterized protein; Belongs to the argonaute family. (1104 aa)
	A0A1Z5S5K8	Uncharacterized protein; Belongs to the argonaute family. (743 aa)
	C5XAA0_SORBI	Uncharacterized protein. (942 aa)
	C5XCT9_SORBI	DRBM domain-containing protein. (172 aa)
	C5XSV2_SORBI	Uncharacterized protein. (236 aa)
	C5YP46_SORBI	Uncharacterized protein. (198 aa)
	C5Z8N2_SORBI	Uncharacterized protein. (243 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PN88	A0A1B6QJK2	A0A1B6PN88	A0A1B6QJK2	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.696
A0A1B6PN88	A0A1B6QQZ1	A0A1B6PN88	A0A1B6QQZ1	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.714
A0A1B6PN88	A0A1Z5RDX5	A0A1B6PN88	A0A1Z5RDX5	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.604
A0A1B6PN88	C5XCT9_SORBI	A0A1B6PN88	C5XCT9	Uncharacterized protein; Belongs to the argonaute family.	DRBM domain-containing protein.	0.604
A0A1B6PN88	C5XSV2_SORBI	A0A1B6PN88	C5XSV2	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.521
A0A1B6QJK2	A0A1B6PN88	A0A1B6QJK2	A0A1B6PN88	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.696
A0A1B6QJK2	A0A1Z5RQS2	A0A1B6QJK2	A0A1Z5RQS2	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.524
A0A1B6QJK2	A0A1Z5S5K8	A0A1B6QJK2	A0A1Z5S5K8	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.556
A0A1B6QJK2	C5XAA0_SORBI	A0A1B6QJK2	C5XAA0	Uncharacterized protein.	Uncharacterized protein.	0.519
A0A1B6QJK2	C5XSV2_SORBI	A0A1B6QJK2	C5XSV2	Uncharacterized protein.	Uncharacterized protein.	0.534
A0A1B6QQZ1	A0A1B6PN88	A0A1B6QQZ1	A0A1B6PN88	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein; Belongs to the argonaute family.	0.714
A0A1B6QQZ1	A0A1Z5RQS2	A0A1B6QQZ1	A0A1Z5RQS2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein; Belongs to the argonaute family.	0.588
A0A1B6QQZ1	A0A1Z5S5K8	A0A1B6QQZ1	A0A1Z5S5K8	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein; Belongs to the argonaute family.	0.602
A0A1B6QQZ1	C5XAA0_SORBI	A0A1B6QQZ1	C5XAA0	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.594
A0A1B6QQZ1	C5XSV2_SORBI	A0A1B6QQZ1	C5XSV2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.581
A0A1B6QQZ1	C5YP46_SORBI	A0A1B6QQZ1	C5YP46	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.488
A0A1B6QQZ1	C5Z8N2_SORBI	A0A1B6QQZ1	C5Z8N2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.488
A0A1Z5RDX5	A0A1B6PN88	A0A1Z5RDX5	A0A1B6PN88	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein; Belongs to the argonaute family.	0.604
A0A1Z5RDX5	A0A1Z5RQS2	A0A1Z5RDX5	A0A1Z5RQS2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein; Belongs to the argonaute family.	0.632
A0A1Z5RDX5	A0A1Z5S5K8	A0A1Z5RDX5	A0A1Z5S5K8	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein; Belongs to the argonaute family.	0.528

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