(8 nodes) Restriction endonuclease type II-like, and DNA polymerase binding network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YHI9	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family. (967 aa)
	A0A1B6Q848	ERCC4 domain-containing protein. (456 aa)
	A0A1B6QID7	Uncharacterized protein. (321 aa)
	A0A1B6QRA4	ERCC4 domain-containing protein. (992 aa)
	C5WVC6_SORBI	Uncharacterized protein. (397 aa)
	C5X0Q4_SORBI	Uncharacterized protein. (1343 aa)
	C5X9M1_SORBI	Uncharacterized protein. (1493 aa)
	C5Y655_SORBI	Uncharacterized protein. (1468 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YHI9	A0A1B6Q848	A0A194YHI9	A0A1B6Q848	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	ERCC4 domain-containing protein.	0.780
A0A194YHI9	A0A1B6QID7	A0A194YHI9	A0A1B6QID7	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.812
A0A194YHI9	A0A1B6QRA4	A0A194YHI9	A0A1B6QRA4	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	ERCC4 domain-containing protein.	0.772
A0A194YHI9	C5WVC6_SORBI	A0A194YHI9	C5WVC6	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.807
A0A194YHI9	C5X0Q4_SORBI	A0A194YHI9	C5X0Q4	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.844
A0A194YHI9	C5X9M1_SORBI	A0A194YHI9	C5X9M1	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.963
A0A194YHI9	C5Y655_SORBI	A0A194YHI9	C5Y655	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	Uncharacterized protein.	0.763
A0A1B6Q848	A0A194YHI9	A0A1B6Q848	A0A194YHI9	ERCC4 domain-containing protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.780
A0A1B6Q848	A0A1B6QID7	A0A1B6Q848	A0A1B6QID7	ERCC4 domain-containing protein.	Uncharacterized protein.	0.904
A0A1B6Q848	A0A1B6QRA4	A0A1B6Q848	A0A1B6QRA4	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.892
A0A1B6Q848	C5WVC6_SORBI	A0A1B6Q848	C5WVC6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.974
A0A1B6Q848	C5X0Q4_SORBI	A0A1B6Q848	C5X0Q4	ERCC4 domain-containing protein.	Uncharacterized protein.	0.777
A0A1B6Q848	C5X9M1_SORBI	A0A1B6Q848	C5X9M1	ERCC4 domain-containing protein.	Uncharacterized protein.	0.789
A0A1B6Q848	C5Y655_SORBI	A0A1B6Q848	C5Y655	ERCC4 domain-containing protein.	Uncharacterized protein.	0.900
A0A1B6QID7	A0A194YHI9	A0A1B6QID7	A0A194YHI9	Uncharacterized protein.	Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.	0.812
A0A1B6QID7	A0A1B6Q848	A0A1B6QID7	A0A1B6Q848	Uncharacterized protein.	ERCC4 domain-containing protein.	0.904
A0A1B6QID7	A0A1B6QRA4	A0A1B6QID7	A0A1B6QRA4	Uncharacterized protein.	ERCC4 domain-containing protein.	0.972
A0A1B6QID7	C5WVC6_SORBI	A0A1B6QID7	C5WVC6	Uncharacterized protein.	Uncharacterized protein.	0.987
A0A1B6QID7	C5X0Q4_SORBI	A0A1B6QID7	C5X0Q4	Uncharacterized protein.	Uncharacterized protein.	0.986
A0A1B6QID7	C5X9M1_SORBI	A0A1B6QID7	C5X9M1	Uncharacterized protein.	Uncharacterized protein.	0.992

page 1 of 3

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About