(19 nodes) DNA methylation-dependent heterochromatin assembly, and DNA alkylation network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

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protein homology

Your Input:
	A0A194YKD4	Uncharacterized protein. (130 aa)
	A0A194YR47	Uncharacterized protein. (898 aa)
	A0A1B6PCC0	Uncharacterized protein; Belongs to the argonaute family. (881 aa)
	A0A1B6PFB3	Uncharacterized protein. (970 aa)
	A0A1B6PHF0	Uncharacterized protein. (554 aa)
	A0A1B6Q0M1	Uncharacterized protein. (405 aa)
	A0A1B6Q7R2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1657 aa)
	A0A1B6Q8E3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1577 aa)
	A0A1B6QR11	Uncharacterized protein. (186 aa)
	A0A1W0VTZ3	Uncharacterized protein. (218 aa)
	A0A1Z5REK7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1484 aa)
	C5WMX0_SORBI	Uncharacterized protein. (836 aa)
	C5WWU8_SORBI	Uncharacterized protein. (945 aa)
	C5X500_SORBI	Uncharacterized protein. (710 aa)
	C5XGJ6_SORBI	Uncharacterized protein. (608 aa)
	C5YA80_SORBI	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1128 aa)
	C5YHJ3_SORBI	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1251 aa)
	C5YMQ8_SORBI	Uncharacterized protein. (666 aa)
	C5Z491_SORBI	Morc6_S5 domain-containing protein. (736 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YKD4	A0A1B6PFB3	A0A194YKD4	A0A1B6PFB3	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A194YKD4	A0A1B6Q0M1	A0A194YKD4	A0A1B6Q0M1	Uncharacterized protein.	Uncharacterized protein.	0.932
A0A194YKD4	A0A1B6QR11	A0A194YKD4	A0A1B6QR11	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A194YKD4	A0A1Z5REK7	A0A194YKD4	A0A1Z5REK7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.503
A0A194YKD4	C5WWU8_SORBI	A0A194YKD4	C5WWU8	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A194YKD4	C5XGJ6_SORBI	A0A194YKD4	C5XGJ6	Uncharacterized protein.	Uncharacterized protein.	0.524
A0A194YR47	A0A1B6PHF0	A0A194YR47	A0A1B6PHF0	Uncharacterized protein.	Uncharacterized protein.	0.415
A0A194YR47	A0A1B6Q8E3	A0A194YR47	A0A1B6Q8E3	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.655
A0A194YR47	A0A1Z5REK7	A0A194YR47	A0A1Z5REK7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.593
A0A194YR47	C5X500_SORBI	A0A194YR47	C5X500	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A194YR47	C5YHJ3_SORBI	A0A194YR47	C5YHJ3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.484
A0A194YR47	C5YMQ8_SORBI	A0A194YR47	C5YMQ8	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A1B6PCC0	A0A1B6Q0M1	A0A1B6PCC0	A0A1B6Q0M1	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.573
A0A1B6PCC0	A0A1B6Q7R2	A0A1B6PCC0	A0A1B6Q7R2	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.714
A0A1B6PCC0	A0A1B6Q8E3	A0A1B6PCC0	A0A1B6Q8E3	Uncharacterized protein; Belongs to the argonaute family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.785
A0A1B6PCC0	A0A1Z5REK7	A0A1B6PCC0	A0A1Z5REK7	Uncharacterized protein; Belongs to the argonaute family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.678
A0A1B6PCC0	C5XGJ6_SORBI	A0A1B6PCC0	C5XGJ6	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.524
A0A1B6PCC0	C5YHJ3_SORBI	A0A1B6PCC0	C5YHJ3	Uncharacterized protein; Belongs to the argonaute family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.422
A0A1B6PFB3	A0A194YKD4	A0A1B6PFB3	A0A194YKD4	Uncharacterized protein.	Uncharacterized protein.	0.752
A0A1B6PFB3	A0A1B6Q0M1	A0A1B6PFB3	A0A1B6Q0M1	Uncharacterized protein.	Uncharacterized protein.	0.868

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