(32 nodes) Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

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protein homology

Your Input:
	C5Z8E1_SORBI	Nudix hydrolase domain-containing protein. (323 aa)
	C5Z2T4_SORBI	Uncharacterized protein. (428 aa)
	A0A1Z5S9J1	MIF4G domain-containing protein. (867 aa)
	A0A1Z5SAD0	Mago-bind domain-containing protein. (225 aa)
	C5X2N4_SORBI	WH1 domain-containing protein. (385 aa)
	C5X3P5_SORBI	Uncharacterized protein. (159 aa)
	C5X9A0_SORBI	Helicase ATP-binding domain-containing protein. (1269 aa)
	C5XFL3_SORBI	Uncharacterized protein; Belongs to the DEAD box helicase family. (578 aa)
	C5XPM3_SORBI	Btz domain-containing protein. (713 aa)
	C5XW19_SORBI	Uncharacterized protein. (1160 aa)
	C5XWR4_SORBI	Uncharacterized protein; Belongs to the DEAD box helicase family. (407 aa)
	C5XY51_SORBI	Uncharacterized protein. (1193 aa)
	C5XY97_SORBI	Uncharacterized protein. (934 aa)
	C5Y429_SORBI	Uncharacterized protein. (469 aa)
	C5Y829_SORBI	Uncharacterized protein. (1388 aa)
	C5YLJ8_SORBI	Uncharacterized protein. (159 aa)
	C5YQL8_SORBI	Uncharacterized protein. (479 aa)
	C5YZM3_SORBI	RRM domain-containing protein. (200 aa)
	A0A194YMR2	Uncharacterized protein. (1371 aa)
	A0A1B6PL15	Smg4_UPF3 domain-containing protein. (503 aa)
	A0A1B6PM50	Upf2 domain-containing protein. (149 aa)
	A0A1B6PM75	Uncharacterized protein. (942 aa)
	A0A1B6Q114	Uncharacterized protein; Belongs to the DEAD box helicase family. (492 aa)
	A0A1B6Q477	Uncharacterized protein; Belongs to the DEAD box helicase family. (791 aa)
	A0A1B6QBA2	Uncharacterized protein. (1046 aa)
	A0A1B6QM34	Uncharacterized protein. (1195 aa)
	A0A1W0VVT0	Uncharacterized protein; Belongs to the DEAD box helicase family. (715 aa)
	A0A1W0VXM8	RRM domain-containing protein. (192 aa)
	A0A1W0VZ89	Uncharacterized protein. (376 aa)
	A0A1Z5R3Q2	Btz domain-containing protein. (730 aa)
	A0A1Z5RH19	Uncharacterized protein. (231 aa)
	A0A1Z5S4A2	RRM domain-containing protein. (197 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YMR2	A0A1B6PL15	A0A194YMR2	A0A1B6PL15	Uncharacterized protein.	Smg4_UPF3 domain-containing protein.	0.699
A0A194YMR2	A0A1B6QM34	A0A194YMR2	A0A1B6QM34	Uncharacterized protein.	Uncharacterized protein.	0.993
A0A194YMR2	A0A1Z5S9J1	A0A194YMR2	A0A1Z5S9J1	Uncharacterized protein.	MIF4G domain-containing protein.	0.546
A0A194YMR2	C5X9A0_SORBI	A0A194YMR2	C5X9A0	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.547
A0A194YMR2	C5Z8E1_SORBI	A0A194YMR2	C5Z8E1	Uncharacterized protein.	Nudix hydrolase domain-containing protein.	0.529
A0A1B6PL15	A0A194YMR2	A0A1B6PL15	A0A194YMR2	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.699
A0A1B6PL15	A0A1B6PM50	A0A1B6PL15	A0A1B6PM50	Smg4_UPF3 domain-containing protein.	Upf2 domain-containing protein.	0.980
A0A1B6PL15	A0A1B6Q114	A0A1B6PL15	A0A1B6Q114	Smg4_UPF3 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.627
A0A1B6PL15	A0A1B6Q477	A0A1B6PL15	A0A1B6Q477	Smg4_UPF3 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.627
A0A1B6PL15	A0A1B6QBA2	A0A1B6PL15	A0A1B6QBA2	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.980
A0A1B6PL15	A0A1W0VVT0	A0A1B6PL15	A0A1W0VVT0	Smg4_UPF3 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.627
A0A1B6PL15	A0A1W0VXM8	A0A1B6PL15	A0A1W0VXM8	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.960
A0A1B6PL15	A0A1Z5RH19	A0A1B6PL15	A0A1Z5RH19	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.588
A0A1B6PL15	A0A1Z5S4A2	A0A1B6PL15	A0A1Z5S4A2	Smg4_UPF3 domain-containing protein.	RRM domain-containing protein.	0.960
A0A1B6PL15	A0A1Z5S9J1	A0A1B6PL15	A0A1Z5S9J1	Smg4_UPF3 domain-containing protein.	MIF4G domain-containing protein.	0.905
A0A1B6PL15	A0A1Z5SAD0	A0A1B6PL15	A0A1Z5SAD0	Smg4_UPF3 domain-containing protein.	Mago-bind domain-containing protein.	0.598
A0A1B6PL15	C5X2N4_SORBI	A0A1B6PL15	C5X2N4	Smg4_UPF3 domain-containing protein.	WH1 domain-containing protein.	0.588
A0A1B6PL15	C5X3P5_SORBI	A0A1B6PL15	C5X3P5	Smg4_UPF3 domain-containing protein.	Uncharacterized protein.	0.995
A0A1B6PL15	C5X9A0_SORBI	A0A1B6PL15	C5X9A0	Smg4_UPF3 domain-containing protein.	Helicase ATP-binding domain-containing protein.	0.998
A0A1B6PL15	C5XFL3_SORBI	A0A1B6PL15	C5XFL3	Smg4_UPF3 domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.627

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