(43 nodes) Regulation of auxin mediated signaling pathway network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6Q718	Nsp1_C domain-containing protein. (756 aa)
	A0A1B6P7F8	Uncharacterized protein. (686 aa)
	A0A1B6PLD9	Uncharacterized protein. (728 aa)
	A0A1B6Q7V4	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (376 aa)
	A0A1B6Q9N9	Uncharacterized protein. (1155 aa)
	A0A1B6QDI1	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (371 aa)
	A0A1B6QNI5	Uncharacterized protein; Belongs to the DOCK family. (1839 aa)
	A0A1B6QPD9	Uncharacterized protein. (345 aa)
	A0A1B6QQ66	Uncharacterized protein. (346 aa)
	A0A1W0VXK1	Uncharacterized protein. (232 aa)
	A0A1Z5R261	Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family. (2466 aa)
	A0A1Z5R7Z6	Uncharacterized protein. (1260 aa)
	A0A1Z5R815	Uncharacterized protein. (1267 aa)
	A0A1Z5RA91	Uncharacterized protein. (1541 aa)
	A0A1Z5RAN2	Uncharacterized protein. (299 aa)
	A0A1Z5RFQ2	Uncharacterized protein. (385 aa)
	A0A1Z5RPT8	Uncharacterized protein. (469 aa)
	A0A1Z5S505	Uncharacterized protein. (634 aa)
	C5WM19_SORBI	Uncharacterized protein. (360 aa)
	C5WMD1_SORBI	Uncharacterized protein. (336 aa)
	C5WPC1_SORBI	Uncharacterized protein. (672 aa)
	C5WPD7_SORBI	Uncharacterized protein. (672 aa)
	C5WRI2_SORBI	Protein kinase domain-containing protein. (656 aa)
	C5WS08_SORBI	Uncharacterized protein. (388 aa)
	C5XDS3_SORBI	Uncharacterized protein. (367 aa)
	C5XF44_SORBI	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (653 aa)
	C5XGD1_SORBI	F-box domain-containing protein. (442 aa)
	C5XIA5_SORBI	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (362 aa)
	C5XMI2_SORBI	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (444 aa)
	C5XTJ8_SORBI	Uncharacterized protein. (318 aa)
	C5XX07_SORBI	Uncharacterized protein. (327 aa)
	C5XXA5_SORBI	Uncharacterized protein. (452 aa)
	C5Y431_SORBI	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (583 aa)
	C5Y8R8_SORBI	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family. (1335 aa)
	C5YAW5_SORBI	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. (571 aa)
	C5YLR9_SORBI	Uncharacterized protein. (225 aa)
	C5YWN0_SORBI	Bidirectional sugar transporter SWEET; Mediates both low-affinity uptake and efflux of sugar across the membrane; Belongs to the SWEET sugar transporter family. (239 aa)
	C5Z4U5_SORBI	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (600 aa)
	C5Z640_SORBI	Uncharacterized protein. (775 aa)
	C5Z6L0_SORBI	Uncharacterized protein. (313 aa)
	C5Z6M5_SORBI	Uncharacterized protein. (373 aa)
	C5Z7A0_SORBI	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (626 aa)
	C5Z7E9_SORBI	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family. (606 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6P7F8	C5WPC1_SORBI	A0A1B6P7F8	C5WPC1	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1B6P7F8	C5WPD7_SORBI	A0A1B6P7F8	C5WPD7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1B6PLD9	A0A1Z5S505	A0A1B6PLD9	A0A1Z5S505	Uncharacterized protein.	Uncharacterized protein.	0.573
A0A1Z5S505	A0A1B6PLD9	A0A1Z5S505	A0A1B6PLD9	Uncharacterized protein.	Uncharacterized protein.	0.573
C5WPC1_SORBI	A0A1B6P7F8	C5WPC1	A0A1B6P7F8	Uncharacterized protein.	Uncharacterized protein.	0.900
C5WPC1_SORBI	C5WPD7_SORBI	C5WPC1	C5WPD7	Uncharacterized protein.	Uncharacterized protein.	0.900
C5WPD7_SORBI	A0A1B6P7F8	C5WPD7	A0A1B6P7F8	Uncharacterized protein.	Uncharacterized protein.	0.900
C5WPD7_SORBI	C5WPC1_SORBI	C5WPD7	C5WPC1	Uncharacterized protein.	Uncharacterized protein.	0.900
C5XIA5_SORBI	C5XXA5_SORBI	C5XIA5	C5XXA5	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.	Uncharacterized protein.	0.519
C5XXA5_SORBI	C5XIA5_SORBI	C5XXA5	C5XIA5	Uncharacterized protein.	Auxin efflux carrier component; May act as a component of the auxin efflux carrier. Belongs to the auxin efflux carrier (TC 2.A.69.1) family.	0.519
C5Y8R8_SORBI	C5YAW5_SORBI	C5Y8R8	C5YAW5	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.986
C5Y8R8_SORBI	C5Z6M5_SORBI	C5Y8R8	C5Z6M5	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	Uncharacterized protein.	0.987
C5YAW5_SORBI	C5Y8R8_SORBI	C5YAW5	C5Y8R8	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.986
C5YAW5_SORBI	C5Z6M5_SORBI	C5YAW5	C5Z6M5	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	Uncharacterized protein.	0.981
C5Z6M5_SORBI	C5Y8R8_SORBI	C5Z6M5	C5Y8R8	Uncharacterized protein.	Elongator complex protein 1; Component of the RNA polymerase II elongator complex, a multiprotein complex associated with the RNA polymerase II (Pol II) holoenzyme, and which is involved in transcriptional elongation. Belongs to the ELP1/IKA1 family.	0.987
C5Z6M5_SORBI	C5YAW5_SORBI	C5Z6M5	C5YAW5	Uncharacterized protein.	Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.	0.981

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