(24 nodes) Nucleobase transmembrane transporter activity network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5XGQ4_SORBI	Uncharacterized protein. (387 aa)
	C5X312_SORBI	Uncharacterized protein. (379 aa)
	C5X307_SORBI	Uncharacterized protein. (291 aa)
	A0A1W0VSG5	Uncharacterized protein. (218 aa)
	A0A1B6QD13	Uncharacterized protein. (389 aa)
	A0A1B6PMV1	Uncharacterized protein. (394 aa)
	A0A1B6PLD4	Uncharacterized protein. (390 aa)
	C5Y0T1_SORBI	Uncharacterized protein. (501 aa)
	C5YVV1_SORBI	Uncharacterized protein. (565 aa)
	C5YVF3_SORBI	Uncharacterized protein. (345 aa)
	C5YNZ3_SORBI	Uncharacterized protein. (424 aa)
	C5YEN9_SORBI	Uncharacterized protein. (381 aa)
	A0A1Z5SBF5	Uncharacterized protein. (378 aa)
	A0A1Z5RHH0	Uncharacterized protein. (551 aa)
	A0A1Z5R4W2	Uncharacterized protein. (369 aa)
	C5YEN7_SORBI	Uncharacterized protein. (374 aa)
	C5YAR3_SORBI	Uncharacterized protein. (417 aa)
	A0A194YS31	Uncharacterized protein. (544 aa)
	A0A1B6PCR7	Uncharacterized protein. (447 aa)
	A0A1B6PDA9	Uncharacterized protein. (430 aa)
	A0A1B6PDX5	Uncharacterized protein. (558 aa)
	A0A1B6PG65	Uncharacterized protein. (410 aa)
	A0A1W0W6E7	Uncharacterized protein. (405 aa)
	A0A1W0W0I1	Uncharacterized protein. (684 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YS31	A0A1B6PDX5	A0A194YS31	A0A1B6PDX5	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A194YS31	A0A1W0W0I1	A0A194YS31	A0A1W0W0I1	Uncharacterized protein.	Uncharacterized protein.	0.653
A0A194YS31	A0A1Z5RHH0	A0A194YS31	A0A1Z5RHH0	Uncharacterized protein.	Uncharacterized protein.	0.516
A0A194YS31	C5YVV1_SORBI	A0A194YS31	C5YVV1	Uncharacterized protein.	Uncharacterized protein.	0.518
A0A1B6PDX5	A0A194YS31	A0A1B6PDX5	A0A194YS31	Uncharacterized protein.	Uncharacterized protein.	0.640
A0A1B6PDX5	A0A1Z5RHH0	A0A1B6PDX5	A0A1Z5RHH0	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A1B6PDX5	C5YVV1_SORBI	A0A1B6PDX5	C5YVV1	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1W0W0I1	A0A194YS31	A0A1W0W0I1	A0A194YS31	Uncharacterized protein.	Uncharacterized protein.	0.653
A0A1W0W0I1	A0A1Z5RHH0	A0A1W0W0I1	A0A1Z5RHH0	Uncharacterized protein.	Uncharacterized protein.	0.570
A0A1W0W0I1	C5YVV1_SORBI	A0A1W0W0I1	C5YVV1	Uncharacterized protein.	Uncharacterized protein.	0.572
A0A1Z5RHH0	A0A194YS31	A0A1Z5RHH0	A0A194YS31	Uncharacterized protein.	Uncharacterized protein.	0.516
A0A1Z5RHH0	A0A1B6PDX5	A0A1Z5RHH0	A0A1B6PDX5	Uncharacterized protein.	Uncharacterized protein.	0.528
A0A1Z5RHH0	A0A1W0W0I1	A0A1Z5RHH0	A0A1W0W0I1	Uncharacterized protein.	Uncharacterized protein.	0.570
C5YVV1_SORBI	A0A194YS31	C5YVV1	A0A194YS31	Uncharacterized protein.	Uncharacterized protein.	0.518
C5YVV1_SORBI	A0A1B6PDX5	C5YVV1	A0A1B6PDX5	Uncharacterized protein.	Uncharacterized protein.	0.570
C5YVV1_SORBI	A0A1W0W0I1	C5YVV1	A0A1W0W0I1	Uncharacterized protein.	Uncharacterized protein.	0.572

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