(57 nodes) Lateral root development network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1Z5RIL6	Uncharacterized protein. (749 aa)
	A0A1Z5RHU9	Uncharacterized protein. (326 aa)
	A0A1Z5RFQ2	Uncharacterized protein. (385 aa)
	A0A1Z5RF16	AAI domain-containing protein. (132 aa)
	A0A1Z5RDY6	Uncharacterized protein. (899 aa)
	A0A1Z5RDQ3	CCHC-type domain-containing protein. (482 aa)
	A0A1Z5R228	CCHC-type domain-containing protein. (383 aa)
	A0A1W0W820	Homeobox domain-containing protein. (260 aa)
	A0A1W0W650	Amine oxidase. (636 aa)
	A0A1W0W5Z3	PORR domain-containing protein. (455 aa)
	A0A1W0W311	Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family. (223 aa)
	A0A1B6QPR8	WPP domain-containing protein. (141 aa)
	A0A1B6QM10	CCHC-type domain-containing protein. (1016 aa)
	A0A1B6QLL7	PARP catalytic domain-containing protein. (595 aa)
	A0A1B6QA98	Uncharacterized protein. (700 aa)
	A0A1B6Q922	CCHC-type domain-containing protein. (918 aa)
	A0A1B6Q913	Uncharacterized protein. (1649 aa)
	A0A1B6PSR5	Uncharacterized protein. (665 aa)
	A0A1B6PNN9	Uncharacterized protein. (488 aa)
	A0A1B6PNC7	SET domain-containing protein. (469 aa)
	C5Z785_SORBI	Uncharacterized protein. (474 aa)
	C5Z5V8_SORBI	TPT domain-containing protein. (323 aa)
	C5Z432_SORBI	CCHC-type domain-containing protein. (740 aa)
	C5Z245_SORBI	AAI domain-containing protein. (133 aa)
	C5YSZ0_SORBI	Protein kinase domain-containing protein. (1005 aa)
	C5YS23_SORBI	ORC_WH_C domain-containing protein. (716 aa)
	A0A1B6PBH4	WD_REPEATS_REGION domain-containing protein. (759 aa)
	C5YRT4_SORBI	Uncharacterized protein. (903 aa)
	C5YGZ1_SORBI	Uncharacterized protein. (601 aa)
	C5YDJ3_SORBI	AAI domain-containing protein. (129 aa)
	C5YDJ2_SORBI	AAI domain-containing protein. (130 aa)
	C5YAF5_SORBI	Amine oxidase. (782 aa)
	C5Y625_SORBI	Uncharacterized protein. (558 aa)
	C5Y1G9_SORBI	AAI domain-containing protein. (119 aa)
	C5XXA5_SORBI	Uncharacterized protein. (452 aa)
	C5XV42_SORBI	Uncharacterized protein. (293 aa)
	C5XU59_SORBI	Uncharacterized protein. (559 aa)
	C5XKD9_SORBI	Uncharacterized protein. (741 aa)
	C5XIE1_SORBI	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (355 aa)
	C5XG53_SORBI	Uncharacterized protein. (571 aa)
	C5WZG6_SORBI	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family. (842 aa)
	C5WYR0_SORBI	Peptidylprolyl isomerase. (630 aa)
	C5WSJ6_SORBI	AAI domain-containing protein. (155 aa)
	C5WSH8_SORBI	Uncharacterized protein. (595 aa)
	C5WS08_SORBI	Uncharacterized protein. (388 aa)
	C5WRZ3_SORBI	PARP catalytic domain-containing protein. (573 aa)
	C5WRI7_SORBI	F-box domain-containing protein. (921 aa)
	C5WQA4_SORBI	WD_REPEATS_REGION domain-containing protein. (380 aa)
	C5WMU9_SORBI	AAI domain-containing protein. (137 aa)
	C5WMU8_SORBI	Uncharacterized protein. (605 aa)
	A0A1Z5S8B9	AAI domain-containing protein. (129 aa)
	A0A1Z5S605	Uncharacterized protein. (348 aa)
	A0A1Z5RPT8	Uncharacterized protein. (469 aa)
	A0A1Z5RP05	Uncharacterized protein. (571 aa)
	A0A1Z5RLQ7	Uncharacterized protein. (116 aa)
	A0A1Z5RLN1	Uncharacterized protein. (563 aa)
	A0A1Z5RIP1	Uncharacterized protein. (744 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6Q913	C5WRI7_SORBI	A0A1B6Q913	C5WRI7	Uncharacterized protein.	F-box domain-containing protein.	0.490
A0A1B6Q913	C5XKD9_SORBI	A0A1B6Q913	C5XKD9	Uncharacterized protein.	Uncharacterized protein.	0.508
A0A1W0W5Z3	A0A1Z5RPT8	A0A1W0W5Z3	A0A1Z5RPT8	PORR domain-containing protein.	Uncharacterized protein.	0.404
A0A1W0W5Z3	A0A1Z5S8B9	A0A1W0W5Z3	A0A1Z5S8B9	PORR domain-containing protein.	AAI domain-containing protein.	0.403
A0A1W0W5Z3	C5WS08_SORBI	A0A1W0W5Z3	C5WS08	PORR domain-containing protein.	Uncharacterized protein.	0.431
A0A1W0W5Z3	C5WSJ6_SORBI	A0A1W0W5Z3	C5WSJ6	PORR domain-containing protein.	AAI domain-containing protein.	0.432
A0A1W0W5Z3	C5Z245_SORBI	A0A1W0W5Z3	C5Z245	PORR domain-containing protein.	AAI domain-containing protein.	0.459
A0A1W0W650	C5YAF5_SORBI	A0A1W0W650	C5YAF5	Amine oxidase.	Amine oxidase.	0.603
A0A1Z5RPT8	A0A1W0W5Z3	A0A1Z5RPT8	A0A1W0W5Z3	Uncharacterized protein.	PORR domain-containing protein.	0.404
A0A1Z5S8B9	A0A1W0W5Z3	A0A1Z5S8B9	A0A1W0W5Z3	AAI domain-containing protein.	PORR domain-containing protein.	0.403
C5WRI7_SORBI	A0A1B6Q913	C5WRI7	A0A1B6Q913	F-box domain-containing protein.	Uncharacterized protein.	0.490
C5WS08_SORBI	A0A1W0W5Z3	C5WS08	A0A1W0W5Z3	Uncharacterized protein.	PORR domain-containing protein.	0.431
C5WSJ6_SORBI	A0A1W0W5Z3	C5WSJ6	A0A1W0W5Z3	AAI domain-containing protein.	PORR domain-containing protein.	0.432
C5XKD9_SORBI	A0A1B6Q913	C5XKD9	A0A1B6Q913	Uncharacterized protein.	Uncharacterized protein.	0.508
C5YAF5_SORBI	A0A1W0W650	C5YAF5	A0A1W0W650	Amine oxidase.	Amine oxidase.	0.603
C5Z245_SORBI	A0A1W0W5Z3	C5Z245	A0A1W0W5Z3	AAI domain-containing protein.	PORR domain-containing protein.	0.459

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