(54 nodes) Small regulatory ncRNA processing network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5Z8V1_SORBI	C2H2-type domain-containing protein. (713 aa)
	C5Z8N2_SORBI	Uncharacterized protein. (243 aa)
	C5Z764_SORBI	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1239 aa)
	C5Z045_SORBI	Uncharacterized protein. (573 aa)
	C5YWP4_SORBI	3'-5' exonuclease domain-containing protein. (562 aa)
	C5YP46_SORBI	Uncharacterized protein. (198 aa)
	C5YK89_SORBI	Uncharacterized protein. (291 aa)
	C5YIV2_SORBI	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1220 aa)
	C5YI88_SORBI	C2H2-type domain-containing protein. (642 aa)
	C5YHJ3_SORBI	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1251 aa)
	C5YB92_SORBI	Uncharacterized protein. (316 aa)
	C5YA80_SORBI	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1128 aa)
	C5Y8Y9_SORBI	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1239 aa)
	C5XXF2_SORBI	Uncharacterized protein. (217 aa)
	C5XXC1_SORBI	Nuclear cap-binding protein subunit 2. (242 aa)
	RS34	Arginine/serine-rich splicing factor RS34. (295 aa)
	C5XM68_SORBI	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1207 aa)
	C5XLU8_SORBI	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1127 aa)
	MED17	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (659 aa)
	C5XCT9_SORBI	DRBM domain-containing protein. (172 aa)
	C5XAP5_SORBI	WD_REPEATS_REGION domain-containing protein. (381 aa)
	C5XAA0_SORBI	Uncharacterized protein. (942 aa)
	C5X8Y2_SORBI	WD_REPEATS_REGION domain-containing protein. (332 aa)
	A0A1B6QJK2	Uncharacterized protein. (778 aa)
	A0A1B6QK73	Uncharacterized protein. (540 aa)
	A0A1B6QQZ1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1929 aa)
	A0A1W0VTZ3	Uncharacterized protein. (218 aa)
	A0A1W0VU58	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (901 aa)
	A0A1W0W166	Uncharacterized protein. (1771 aa)
	A0A1W0W5Y3	Uncharacterized protein. (332 aa)
	A0A1Z5R3E8	Uncharacterized protein. (1591 aa)
	A0A1Z5RBK3	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1100 aa)
	A0A1Z5RDX5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1665 aa)
	A0A1Z5REK7	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1484 aa)
	A0A1Z5RLY9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2015 aa)
	A0A1Z5RNU6	DUF1771 domain-containing protein. (500 aa)
	A0A1Z5S678	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1386 aa)
	A0A1Z5S6Q5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1637 aa)
	A0A1Z5S9J1	MIF4G domain-containing protein. (867 aa)
	A0A1B6QEE4	Uncharacterized protein. (1285 aa)
	A0A1B6Q8E3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1577 aa)
	A0A1B6Q7R2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1657 aa)
	A0A1B6Q6C4	Uncharacterized protein. (504 aa)
	A0A1B6P826	FHA domain-containing protein. (538 aa)
	A0A1B6P7R5	Uncharacterized protein. (442 aa)
	A0A194YRJ1	RNA-dependent RNA polymerase; Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs). Belongs to the RdRP family. (1127 aa)
	A0A194YNP9	C2H2-type domain-containing protein. (812 aa)
	A0A194YKD4	Uncharacterized protein. (130 aa)
	A0A194YJB2	Uncharacterized protein. (668 aa)
	A0A1Z5SBX6	Uncharacterized protein. (637 aa)
	C5WRS0_SORBI	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1228 aa)
	C5WVP1_SORBI	Uncharacterized protein; Belongs to the argonaute family. (1033 aa)
	A0A194YJ21	SURP motif domain-containing protein. (994 aa)
	A0A1B6QHQ2	Uncharacterized protein. (1762 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YJ21	A0A194YJB2	A0A194YJ21	A0A194YJB2	SURP motif domain-containing protein.	Uncharacterized protein.	0.510
A0A194YJ21	A0A194YNP9	A0A194YJ21	A0A194YNP9	SURP motif domain-containing protein.	C2H2-type domain-containing protein.	0.700
A0A194YJ21	A0A1B6P826	A0A194YJ21	A0A1B6P826	SURP motif domain-containing protein.	FHA domain-containing protein.	0.584
A0A194YJ21	A0A1B6QEE4	A0A194YJ21	A0A1B6QEE4	SURP motif domain-containing protein.	Uncharacterized protein.	0.773
A0A194YJ21	A0A1B6QQZ1	A0A194YJ21	A0A1B6QQZ1	SURP motif domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.582
A0A194YJ21	A0A1Z5S9J1	A0A194YJ21	A0A1Z5S9J1	SURP motif domain-containing protein.	MIF4G domain-containing protein.	0.510
A0A194YJ21	C5XAA0_SORBI	A0A194YJ21	C5XAA0	SURP motif domain-containing protein.	Uncharacterized protein.	0.510
A0A194YJ21	C5XXC1_SORBI	A0A194YJ21	C5XXC1	SURP motif domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.515
A0A194YJ21	C5YI88_SORBI	A0A194YJ21	C5YI88	SURP motif domain-containing protein.	C2H2-type domain-containing protein.	0.688
A0A194YJ21	C5Z8V1_SORBI	A0A194YJ21	C5Z8V1	SURP motif domain-containing protein.	C2H2-type domain-containing protein.	0.700
A0A194YJB2	A0A194YJ21	A0A194YJB2	A0A194YJ21	Uncharacterized protein.	SURP motif domain-containing protein.	0.510
A0A194YJB2	A0A1Z5S9J1	A0A194YJB2	A0A1Z5S9J1	Uncharacterized protein.	MIF4G domain-containing protein.	0.635
A0A194YJB2	C5XXC1_SORBI	A0A194YJB2	C5XXC1	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.685
A0A194YJB2	RS34	A0A194YJB2	C5XT29	Uncharacterized protein.	Arginine/serine-rich splicing factor RS34.	0.523
A0A194YKD4	A0A1Z5R3E8	A0A194YKD4	A0A1Z5R3E8	Uncharacterized protein.	Uncharacterized protein.	0.515
A0A194YKD4	A0A1Z5REK7	A0A194YKD4	A0A1Z5REK7	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.503
A0A194YNP9	A0A194YJ21	A0A194YNP9	A0A194YJ21	C2H2-type domain-containing protein.	SURP motif domain-containing protein.	0.700
A0A194YNP9	A0A1B6QEE4	A0A194YNP9	A0A1B6QEE4	C2H2-type domain-containing protein.	Uncharacterized protein.	0.692
A0A194YNP9	A0A1B6QQZ1	A0A194YNP9	A0A1B6QQZ1	C2H2-type domain-containing protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.684
A0A194YNP9	A0A1Z5S9J1	A0A194YNP9	A0A1Z5S9J1	C2H2-type domain-containing protein.	MIF4G domain-containing protein.	0.985

page 1 of 24

Server load: low (24%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About