(50 nodes) Nuclear membrane network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YKP2	Uncharacterized protein. (524 aa)
	A0A194YN08	Uncharacterized protein. (459 aa)
	A0A194YNN3	DUF5311 domain-containing protein. (1522 aa)
	A0A194YQH3	Cation_ATPase_N domain-containing protein. (36 aa)
	A0A1B6P8A9	Uncharacterized protein. (166 aa)
	A0A1B6PBP9	Uncharacterized protein. (233 aa)
	A0A1B6PED3	AA_permease_C domain-containing protein. (624 aa)
	A0A1B6PEP9	Uncharacterized protein. (179 aa)
	A0A1B6Q4L7	Uncharacterized protein. (505 aa)
	A0A1B6Q6T3	Uncharacterized protein. (583 aa)
	A0A1B6Q769	Uncharacterized protein. (955 aa)
	A0A1B6QGU4	Uncharacterized protein. (894 aa)
	A0A1B6QIU0	Plasma membrane ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIA subfamily. (954 aa)
	A0A1W0VX24	SUN domain-containing protein. (452 aa)
	C5WY80_SORBI	GLTP domain-containing protein. (206 aa)
	C5X4B4_SORBI	Uncharacterized protein. (508 aa)
	C5X5W1_SORBI	Uncharacterized protein. (370 aa)
	C5XBY1_SORBI	Plasma membrane ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIA subfamily. (956 aa)
	C5XD16_SORBI	N-acetyltransferase domain-containing protein. (625 aa)
	C5XE99_SORBI	Uncharacterized protein. (423 aa)
	C5YV71_SORBI	Uncharacterized protein. (444 aa)
	C5YT23_SORBI	Plasma membrane ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIA subfamily. (956 aa)
	C5YTA0_SORBI	Uncharacterized protein. (238 aa)
	C5Z8K4_SORBI	FHA domain-containing protein. (764 aa)
	C5YYM9_SORBI	Uncharacterized protein. (163 aa)
	C5YVD0_SORBI	Uncharacterized protein. (424 aa)
	C5XR81_SORBI	Uncharacterized protein. (417 aa)
	C5XRC9_SORBI	SUN domain-containing protein. (615 aa)
	C5XRK6_SORBI	Uncharacterized protein. (354 aa)
	C5XUP8_SORBI	Pyr_redox_2 domain-containing protein. (358 aa)
	C5XUP9_SORBI	Pyr_redox_2 domain-containing protein. (358 aa)
	C5XW88_SORBI	SUN domain-containing protein. (443 aa)
	C5Y0W8_SORBI	Uncharacterized protein. (501 aa)
	C5Y713_SORBI	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1097 aa)
	C5YGD1_SORBI	DUF4205 domain-containing protein. (627 aa)
	C5YGW5_SORBI	Uncharacterized protein. (372 aa)
	C5YQR7_SORBI	Uncharacterized protein. (225 aa)
	A0A1Z5RHG0	FHA domain-containing protein. (1036 aa)
	A0A1Z5RPH6	Cyclic nucleotide-binding domain-containing protein. (741 aa)
	A0A1W0VY25	Uncharacterized protein. (398 aa)
	A0A1W0VZG6	Uncharacterized protein. (178 aa)
	A0A1Z5R4Z7	Uncharacterized protein. (238 aa)
	A0A1Z5R8Y5	DUF4042 domain-containing protein. (1231 aa)
	A0A1Z5RFK1	Uncharacterized protein. (635 aa)
	C5WQW8_SORBI	Uncharacterized protein. (511 aa)
	C5WR22_SORBI	Uncharacterized protein. (529 aa)
	C5WR23_SORBI	AA_permease_C domain-containing protein. (635 aa)
	C5WRX5_SORBI	Uncharacterized protein. (504 aa)
	C5WVH0_SORBI	Uncharacterized protein. (559 aa)
	C5WVH9_SORBI	N-acetyltransferase domain-containing protein. (605 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YNN3	C5Y713_SORBI	A0A194YNN3	C5Y713	DUF5311 domain-containing protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.992
A0A194YQH3	A0A1Z5R4Z7	A0A194YQH3	A0A1Z5R4Z7	Cation_ATPase_N domain-containing protein.	Uncharacterized protein.	0.448
A0A1B6PBP9	C5YQR7_SORBI	A0A1B6PBP9	C5YQR7	Uncharacterized protein.	Uncharacterized protein.	0.900
A0A1Z5R4Z7	A0A194YQH3	A0A1Z5R4Z7	A0A194YQH3	Uncharacterized protein.	Cation_ATPase_N domain-containing protein.	0.448
C5WVH9_SORBI	C5XD16_SORBI	C5WVH9	C5XD16	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.901
C5XD16_SORBI	C5WVH9_SORBI	C5XD16	C5WVH9	N-acetyltransferase domain-containing protein.	N-acetyltransferase domain-containing protein.	0.901
C5XE99_SORBI	C5YVD0_SORBI	C5XE99	C5YVD0	Uncharacterized protein.	Uncharacterized protein.	0.901
C5Y713_SORBI	A0A194YNN3	C5Y713	A0A194YNN3	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	DUF5311 domain-containing protein.	0.992
C5YQR7_SORBI	A0A1B6PBP9	C5YQR7	A0A1B6PBP9	Uncharacterized protein.	Uncharacterized protein.	0.900
C5YVD0_SORBI	C5XE99_SORBI	C5YVD0	C5XE99	Uncharacterized protein.	Uncharacterized protein.	0.901

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