(20 nodes) Catalytic step 2 spliceosome network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5WT87_SORBI	RRM domain-containing protein. (168 aa)
	C5WXK8_SORBI	WD_REPEATS_REGION domain-containing protein. (572 aa)
	C5Z768_SORBI	WD_REPEATS_REGION domain-containing protein. (343 aa)
	C5Z5Q8_SORBI	Tr-type G domain-containing protein. (995 aa)
	C5Z502_SORBI	Uncharacterized protein. (491 aa)
	C5YXW0_SORBI	Uncharacterized protein. (720 aa)
	C5YQ06_SORBI	Poly [ADP-ribose] polymerase. (904 aa)
	C5Y082_SORBI	Uncharacterized protein. (491 aa)
	C5XWR4_SORBI	Uncharacterized protein; Belongs to the DEAD box helicase family. (407 aa)
	C5XUM0_SORBI	TOG domain-containing protein. (1280 aa)
	C5XKG3_SORBI	TOG domain-containing protein. (1287 aa)
	C5X3Z7_SORBI	Uncharacterized protein. (932 aa)
	C5Z7G6_SORBI	Uncharacterized protein. (783 aa)
	A0A194YQ78	EFG_C domain-containing protein. (882 aa)
	A0A1B6PKD7	Uncharacterized protein. (166 aa)
	A0A1B6Q2W4	Uncharacterized protein. (184 aa)
	A0A1B6QJ25	Tr-type G domain-containing protein. (1045 aa)
	A0A1Z5RFM4	Uncharacterized protein. (385 aa)
	C5WPP1_SORBI	Uncharacterized protein. (722 aa)
	C5WRQ9_SORBI	PARP catalytic domain-containing protein. (449 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YQ78	A0A1B6PKD7	A0A194YQ78	A0A1B6PKD7	EFG_C domain-containing protein.	Uncharacterized protein.	0.557
A0A194YQ78	A0A1B6QJ25	A0A194YQ78	A0A1B6QJ25	EFG_C domain-containing protein.	Tr-type G domain-containing protein.	0.901
A0A194YQ78	C5WPP1_SORBI	A0A194YQ78	C5WPP1	EFG_C domain-containing protein.	Uncharacterized protein.	0.557
A0A194YQ78	C5WXK8_SORBI	A0A194YQ78	C5WXK8	EFG_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.594
A0A194YQ78	C5X3Z7_SORBI	A0A194YQ78	C5X3Z7	EFG_C domain-containing protein.	Uncharacterized protein.	0.596
A0A194YQ78	C5XKG3_SORBI	A0A194YQ78	C5XKG3	EFG_C domain-containing protein.	TOG domain-containing protein.	0.562
A0A194YQ78	C5XUM0_SORBI	A0A194YQ78	C5XUM0	EFG_C domain-containing protein.	TOG domain-containing protein.	0.562
A0A194YQ78	C5Y082_SORBI	A0A194YQ78	C5Y082	EFG_C domain-containing protein.	Uncharacterized protein.	0.557
A0A194YQ78	C5YXW0_SORBI	A0A194YQ78	C5YXW0	EFG_C domain-containing protein.	Uncharacterized protein.	0.557
A0A194YQ78	C5Z502_SORBI	A0A194YQ78	C5Z502	EFG_C domain-containing protein.	Uncharacterized protein.	0.557
A0A194YQ78	C5Z768_SORBI	A0A194YQ78	C5Z768	EFG_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.747
A0A194YQ78	C5Z7G6_SORBI	A0A194YQ78	C5Z7G6	EFG_C domain-containing protein.	Uncharacterized protein.	0.596
A0A1B6PKD7	A0A194YQ78	A0A1B6PKD7	A0A194YQ78	Uncharacterized protein.	EFG_C domain-containing protein.	0.557
A0A1B6PKD7	A0A1B6Q2W4	A0A1B6PKD7	A0A1B6Q2W4	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A1B6PKD7	A0A1B6QJ25	A0A1B6PKD7	A0A1B6QJ25	Uncharacterized protein.	Tr-type G domain-containing protein.	0.557
A0A1B6PKD7	A0A1Z5RFM4	A0A1B6PKD7	A0A1Z5RFM4	Uncharacterized protein.	Uncharacterized protein.	0.801
A0A1B6PKD7	C5WRQ9_SORBI	A0A1B6PKD7	C5WRQ9	Uncharacterized protein.	PARP catalytic domain-containing protein.	0.801
A0A1B6PKD7	C5WT87_SORBI	A0A1B6PKD7	C5WT87	Uncharacterized protein.	RRM domain-containing protein.	0.801
A0A1B6PKD7	C5WXK8_SORBI	A0A1B6PKD7	C5WXK8	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.877
A0A1B6PKD7	C5X3Z7_SORBI	A0A1B6PKD7	C5X3Z7	Uncharacterized protein.	Uncharacterized protein.	0.958

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