(16 nodes) Trimeric LpxA-like superfamily network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PLI9	Uncharacterized protein. (2410 aa)
	C5X3Z0_SORBI	Uncharacterized protein. (273 aa)
	C5WZ15_SORBI	SATase_N domain-containing protein. (340 aa)
	C5WUP1_SORBI	SATase_N domain-containing protein. (311 aa)
	C5X8X7_SORBI	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. (510 aa)
	C5XHE5_SORBI	Uncharacterized protein. (263 aa)
	C5XSL6_SORBI	Uncharacterized protein. (262 aa)
	C5YUG1_SORBI	SATase_N domain-containing protein. (321 aa)
	C5WLV9_SORBI	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. (507 aa)
	O48877_SORBI	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. (517 aa)
	C5X5T9_SORBI	Uncharacterized protein. (285 aa)
	A5Y409_SORBI	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. (517 aa)
	A0A1Z5R3X9	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. (679 aa)
	A0A1W0VZ91	Acetyltransf_11 domain-containing protein. (338 aa)
	A0A1W0VZ63	SATase_N domain-containing protein. (315 aa)
	A0A1B6QA12	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP. (513 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1W0VZ63	A0A1W0VZ91	A0A1W0VZ63	A0A1W0VZ91	SATase_N domain-containing protein.	Acetyltransf_11 domain-containing protein.	0.422
A0A1W0VZ91	A0A1W0VZ63	A0A1W0VZ91	A0A1W0VZ63	Acetyltransf_11 domain-containing protein.	SATase_N domain-containing protein.	0.422
A0A1W0VZ91	C5WUP1_SORBI	A0A1W0VZ91	C5WUP1	Acetyltransf_11 domain-containing protein.	SATase_N domain-containing protein.	0.422
A0A1W0VZ91	C5WZ15_SORBI	A0A1W0VZ91	C5WZ15	Acetyltransf_11 domain-containing protein.	SATase_N domain-containing protein.	0.422
A0A1W0VZ91	C5X5T9_SORBI	A0A1W0VZ91	C5X5T9	Acetyltransf_11 domain-containing protein.	Uncharacterized protein.	0.949
A0A1W0VZ91	C5YUG1_SORBI	A0A1W0VZ91	C5YUG1	Acetyltransf_11 domain-containing protein.	SATase_N domain-containing protein.	0.422
C5WLV9_SORBI	C5X8X7_SORBI	C5WLV9	C5X8X7	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.	0.411
C5WUP1_SORBI	A0A1W0VZ91	C5WUP1	A0A1W0VZ91	SATase_N domain-containing protein.	Acetyltransf_11 domain-containing protein.	0.422
C5WZ15_SORBI	A0A1W0VZ91	C5WZ15	A0A1W0VZ91	SATase_N domain-containing protein.	Acetyltransf_11 domain-containing protein.	0.422
C5X3Z0_SORBI	C5XSL6_SORBI	C5X3Z0	C5XSL6	Uncharacterized protein.	Uncharacterized protein.	0.852
C5X5T9_SORBI	A0A1W0VZ91	C5X5T9	A0A1W0VZ91	Uncharacterized protein.	Acetyltransf_11 domain-containing protein.	0.949
C5X8X7_SORBI	C5WLV9_SORBI	C5X8X7	C5WLV9	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.	Glucose-1-phosphate adenylyltransferase; This protein plays a role in synthesis of starch. It catalyzes the synthesis of the activated glycosyl donor, ADP-glucose from Glc-1-P and ATP.	0.411
C5XHE5_SORBI	C5XSL6_SORBI	C5XHE5	C5XSL6	Uncharacterized protein.	Uncharacterized protein.	0.854
C5XSL6_SORBI	C5X3Z0_SORBI	C5XSL6	C5X3Z0	Uncharacterized protein.	Uncharacterized protein.	0.852
C5XSL6_SORBI	C5XHE5_SORBI	C5XSL6	C5XHE5	Uncharacterized protein.	Uncharacterized protein.	0.854
C5YUG1_SORBI	A0A1W0VZ91	C5YUG1	A0A1W0VZ91	SATase_N domain-containing protein.	Acetyltransf_11 domain-containing protein.	0.422

Server load: low (30%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About