(20 nodes) Double-stranded RNA-binding domain network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6QQZ1	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1929 aa)
	A0A1B6QK73	Uncharacterized protein. (540 aa)
	A0A1B6QJK2	Uncharacterized protein. (778 aa)
	A0A1B6QI08	Uncharacterized protein. (1152 aa)
	A0A1B6Q729	Uncharacterized protein. (748 aa)
	A0A1B6Q6C4	Uncharacterized protein. (504 aa)
	A0A1B6Q2A9	Uncharacterized protein. (1241 aa)
	A0A1B6PM75	Uncharacterized protein. (942 aa)
	A0A1B6PAS0	Uncharacterized protein. (432 aa)
	A0A1B6P7R5	Uncharacterized protein. (442 aa)
	C5Z8N2_SORBI	Uncharacterized protein. (243 aa)
	C5Z045_SORBI	Uncharacterized protein. (573 aa)
	C5YP46_SORBI	Uncharacterized protein. (198 aa)
	C5YKL8_SORBI	Uncharacterized protein. (298 aa)
	C5YK89_SORBI	Uncharacterized protein. (291 aa)
	C5XY97_SORBI	Uncharacterized protein. (934 aa)
	C5XCT9_SORBI	DRBM domain-containing protein. (172 aa)
	A0A1Z5S678	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1386 aa)
	A0A1Z5RG34	Uncharacterized protein. (329 aa)
	A0A1Z5RDX5	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily. (1665 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6Q6C4	A0A1B6QQZ1	A0A1B6Q6C4	A0A1B6QQZ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.488
A0A1B6Q6C4	A0A1Z5RDX5	A0A1B6Q6C4	A0A1Z5RDX5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.559
A0A1B6Q6C4	C5XCT9_SORBI	A0A1B6Q6C4	C5XCT9	Uncharacterized protein.	DRBM domain-containing protein.	0.559
A0A1B6QK73	A0A1B6QQZ1	A0A1B6QK73	A0A1B6QQZ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.586
A0A1B6QQZ1	A0A1B6Q6C4	A0A1B6QQZ1	A0A1B6Q6C4	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.488
A0A1B6QQZ1	A0A1B6QK73	A0A1B6QQZ1	A0A1B6QK73	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.586
A0A1B6QQZ1	C5YP46_SORBI	A0A1B6QQZ1	C5YP46	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.488
A0A1B6QQZ1	C5Z8N2_SORBI	A0A1B6QQZ1	C5Z8N2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.488
A0A1Z5RDX5	A0A1B6Q6C4	A0A1Z5RDX5	A0A1B6Q6C4	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.559
A0A1Z5RDX5	C5YP46_SORBI	A0A1Z5RDX5	C5YP46	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.559
A0A1Z5RDX5	C5Z8N2_SORBI	A0A1Z5RDX5	C5Z8N2	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	Uncharacterized protein.	0.559
C5XCT9_SORBI	A0A1B6Q6C4	C5XCT9	A0A1B6Q6C4	DRBM domain-containing protein.	Uncharacterized protein.	0.559
C5XCT9_SORBI	C5YP46_SORBI	C5XCT9	C5YP46	DRBM domain-containing protein.	Uncharacterized protein.	0.559
C5XCT9_SORBI	C5Z8N2_SORBI	C5XCT9	C5Z8N2	DRBM domain-containing protein.	Uncharacterized protein.	0.559
C5YP46_SORBI	A0A1B6QQZ1	C5YP46	A0A1B6QQZ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.488
C5YP46_SORBI	A0A1Z5RDX5	C5YP46	A0A1Z5RDX5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.559
C5YP46_SORBI	C5XCT9_SORBI	C5YP46	C5XCT9	Uncharacterized protein.	DRBM domain-containing protein.	0.559
C5Z8N2_SORBI	A0A1B6QQZ1	C5Z8N2	A0A1B6QQZ1	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.488
C5Z8N2_SORBI	A0A1Z5RDX5	C5Z8N2	A0A1Z5RDX5	Uncharacterized protein.	Uncharacterized protein; Belongs to the helicase family. Dicer subfamily.	0.559
C5Z8N2_SORBI	C5XCT9_SORBI	C5Z8N2	C5XCT9	Uncharacterized protein.	DRBM domain-containing protein.	0.559

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