(12 nodes) Polyketide cyclase/dehydrase network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5YUR3_SORBI	Uncharacterized protein. (197 aa)
	A0A1W0VZ95	Uncharacterized protein. (180 aa)
	A0A1W0W084	Uncharacterized protein. (272 aa)
	A0A1Z5S851	Uncharacterized protein. (212 aa)
	C5WNG0_SORBI	Uncharacterized protein. (222 aa)
	C5X6J0_SORBI	Uncharacterized protein. (160 aa)
	C5Z4P3_SORBI	Uncharacterized protein. (204 aa)
	C5XLU2_SORBI	Uncharacterized protein. (209 aa)
	C5XYH3_SORBI	Uncharacterized protein. (204 aa)
	C5XZF6_SORBI	Uncharacterized protein. (211 aa)
	C5YUL6_SORBI	Uncharacterized protein. (186 aa)
	C5YZP9_SORBI	Uncharacterized protein. (216 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1Z5S851	C5YUL6_SORBI	A0A1Z5S851	C5YUL6	Uncharacterized protein.	Uncharacterized protein.	0.481
C5WNG0_SORBI	C5YUL6_SORBI	C5WNG0	C5YUL6	Uncharacterized protein.	Uncharacterized protein.	0.457
C5XZF6_SORBI	C5YUL6_SORBI	C5XZF6	C5YUL6	Uncharacterized protein.	Uncharacterized protein.	0.401
C5YUL6_SORBI	A0A1Z5S851	C5YUL6	A0A1Z5S851	Uncharacterized protein.	Uncharacterized protein.	0.481
C5YUL6_SORBI	C5WNG0_SORBI	C5YUL6	C5WNG0	Uncharacterized protein.	Uncharacterized protein.	0.457
C5YUL6_SORBI	C5XZF6_SORBI	C5YUL6	C5XZF6	Uncharacterized protein.	Uncharacterized protein.	0.401
C5YUL6_SORBI	C5YUR3_SORBI	C5YUL6	C5YUR3	Uncharacterized protein.	Uncharacterized protein.	0.425
C5YUL6_SORBI	C5YZP9_SORBI	C5YUL6	C5YZP9	Uncharacterized protein.	Uncharacterized protein.	0.431
C5YUL6_SORBI	C5Z4P3_SORBI	C5YUL6	C5Z4P3	Uncharacterized protein.	Uncharacterized protein.	0.441
C5YUR3_SORBI	C5YUL6_SORBI	C5YUR3	C5YUL6	Uncharacterized protein.	Uncharacterized protein.	0.425
C5YZP9_SORBI	C5YUL6_SORBI	C5YZP9	C5YUL6	Uncharacterized protein.	Uncharacterized protein.	0.431
C5Z4P3_SORBI	C5YUL6_SORBI	C5Z4P3	C5YUL6	Uncharacterized protein.	Uncharacterized protein.	0.441

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