(41 nodes) SNF2-like, N-terminal domain superfamily network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6QEB1	Uncharacterized protein. (2224 aa)
	C5YZZ8_SORBI	Uncharacterized protein. (1127 aa)
	C5YGK3_SORBI	Uncharacterized protein. (1020 aa)
	C5YGK0_SORBI	Uncharacterized protein. (655 aa)
	C5YD60_SORBI	Uncharacterized protein. (1174 aa)
	C5XTC7_SORBI	Uncharacterized protein. (1024 aa)
	C5XST0_SORBI	Uncharacterized protein. (970 aa)
	C5XS67_SORBI	Uncharacterized protein. (2306 aa)
	C5XF35_SORBI	Uncharacterized protein. (1208 aa)
	C5X9Y6_SORBI	Uncharacterized protein. (857 aa)
	C5X8P4_SORBI	Uncharacterized protein. (778 aa)
	C5X3F0_SORBI	Uncharacterized protein. (822 aa)
	C5X3A8_SORBI	Uncharacterized protein. (756 aa)
	C5WWU8_SORBI	Uncharacterized protein. (945 aa)
	C5WVB2_SORBI	Uncharacterized protein. (888 aa)
	C5WMX0_SORBI	Uncharacterized protein. (836 aa)
	A0A1Z5SC51	Uncharacterized protein. (907 aa)
	A0A1Z5S9H1	Uncharacterized protein. (1405 aa)
	A0A1Z5RQ59	Uncharacterized protein. (2027 aa)
	A0A1Z5RKU0	Uncharacterized protein. (2121 aa)
	A0A1Z5R2E8	Uncharacterized protein. (1458 aa)
	A0A1W0VZX5	Uncharacterized protein. (1260 aa)
	A0A1W0VSE7	Uncharacterized protein. (4047 aa)
	A0A1B6QKI5	Uncharacterized protein. (1483 aa)
	A0A1B6QGH6	Uncharacterized protein. (1230 aa)
	A0A1B6QGA5	Uncharacterized protein. (1674 aa)
	A0A1B6QG41	Uncharacterized protein. (1727 aa)
	A0A1B6QFB4	Uncharacterized protein. (1198 aa)
	A0A1B6Q9F1	Uncharacterized protein. (175 aa)
	A0A1B6Q892	Uncharacterized protein. (1263 aa)
	A0A1B6Q7B1	Uncharacterized protein. (1152 aa)
	A0A1B6Q3J9	Uncharacterized protein. (1107 aa)
	A0A1B6PPE1	Uncharacterized protein. (1050 aa)
	A0A1B6PMK8	Uncharacterized protein. (971 aa)
	A0A1B6PFX8	Uncharacterized protein. (1022 aa)
	A0A1B6PFB3	Uncharacterized protein. (970 aa)
	A0A1B6PAP4	Uncharacterized protein. (2048 aa)
	A0A194YSE6	Uncharacterized protein. (1278 aa)
	A0A194YM58	Uncharacterized protein. (1593 aa)
	A0A194YHQ5	Uncharacterized protein. (1324 aa)
	A0A194YGK5	Uncharacterized protein. (2265 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YGK5	A0A194YM58	A0A194YGK5	A0A194YM58	Uncharacterized protein.	Uncharacterized protein.	0.737
A0A194YGK5	A0A194YSE6	A0A194YGK5	A0A194YSE6	Uncharacterized protein.	Uncharacterized protein.	0.458
A0A194YGK5	A0A1B6PFB3	A0A194YGK5	A0A1B6PFB3	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A194YGK5	A0A1B6QGH6	A0A194YGK5	A0A1B6QGH6	Uncharacterized protein.	Uncharacterized protein.	0.401
A0A194YGK5	A0A1W0VSE7	A0A194YGK5	A0A1W0VSE7	Uncharacterized protein.	Uncharacterized protein.	0.750
A0A194YGK5	A0A1W0VZX5	A0A194YGK5	A0A1W0VZX5	Uncharacterized protein.	Uncharacterized protein.	0.416
A0A194YGK5	A0A1Z5R2E8	A0A194YGK5	A0A1Z5R2E8	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A194YGK5	C5YGK3_SORBI	A0A194YGK5	C5YGK3	Uncharacterized protein.	Uncharacterized protein.	0.429
A0A194YHQ5	A0A194YM58	A0A194YHQ5	A0A194YM58	Uncharacterized protein.	Uncharacterized protein.	0.451
A0A194YHQ5	A0A1B6PPE1	A0A194YHQ5	A0A1B6PPE1	Uncharacterized protein.	Uncharacterized protein.	0.505
A0A194YHQ5	A0A1B6Q9F1	A0A194YHQ5	A0A1B6Q9F1	Uncharacterized protein.	Uncharacterized protein.	0.499
A0A194YHQ5	A0A1W0VSE7	A0A194YHQ5	A0A1W0VSE7	Uncharacterized protein.	Uncharacterized protein.	0.736
A0A194YHQ5	C5WVB2_SORBI	A0A194YHQ5	C5WVB2	Uncharacterized protein.	Uncharacterized protein.	0.512
A0A194YHQ5	C5XF35_SORBI	A0A194YHQ5	C5XF35	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A194YM58	A0A194YGK5	A0A194YM58	A0A194YGK5	Uncharacterized protein.	Uncharacterized protein.	0.737
A0A194YM58	A0A194YHQ5	A0A194YM58	A0A194YHQ5	Uncharacterized protein.	Uncharacterized protein.	0.451
A0A194YM58	A0A194YSE6	A0A194YM58	A0A194YSE6	Uncharacterized protein.	Uncharacterized protein.	0.405
A0A194YM58	A0A1B6PFB3	A0A194YM58	A0A1B6PFB3	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A194YM58	A0A1B6PFX8	A0A194YM58	A0A1B6PFX8	Uncharacterized protein.	Uncharacterized protein.	0.406
A0A194YM58	A0A1B6Q3J9	A0A194YM58	A0A1B6Q3J9	Uncharacterized protein.	Uncharacterized protein.	0.502

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