(43 nodes) SUMOylation of chromatin organization proteins network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1W0W6V4	Rad60-SLD domain-containing protein. (108 aa)
	A0A1W0W6X3	Uncharacterized protein. (247 aa)
	A0A1W0W718	Ubiquitin-like domain-containing protein. (103 aa)
	A0A1Z5R483	Uncharacterized protein. (264 aa)
	A0A1Z5R9C2	Uncharacterized protein. (528 aa)
	A0A1Z5RBE0	Uncharacterized protein. (198 aa)
	A0A1Z5RES0	UBIQUITIN_CONJUGAT_2 domain-containing protein. (168 aa)
	A0A1Z5RG10	Uncharacterized protein. (1961 aa)
	GATC	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). (146 aa)
	C5WSM7_SORBI	Uncharacterized protein. (1477 aa)
	C5WTL6_SORBI	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (103 aa)
	C5WUE8_SORBI	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (160 aa)
	C5WZT7_SORBI	Nuclear pore protein. (874 aa)
	C5X0V8_SORBI	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (160 aa)
	C5X481_SORBI	Nup54 domain-containing protein. (437 aa)
	C5XCC7_SORBI	Rad60-SLD domain-containing protein. (104 aa)
	C5XCC8_SORBI	Rad60-SLD domain-containing protein. (109 aa)
	C5XEI1_SORBI	WD_REPEATS_REGION domain-containing protein. (344 aa)
	C5XG88_SORBI	Small ubiquitin-related modifier. (99 aa)
	C5XK14_SORBI	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (722 aa)
	C5XLT1_SORBI	Nuclear pore complex protein NUP35. (322 aa)
	C5XR43_SORBI	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family. (324 aa)
	A0A194YMH8	Uncharacterized protein. (447 aa)
	C5Y713_SORBI	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (1097 aa)
	C5YEH5_SORBI	UBIQUITIN_CONJUGAT_2 domain-containing protein. (159 aa)
	C5YEH6_SORBI	UBIQUITIN_CONJUGAT_2 domain-containing protein. (159 aa)
	C5YFK4_SORBI	Uncharacterized protein. (846 aa)
	C5Z1B7_SORBI	Nuclear pore complex protein NUP35. (326 aa)
	A0A194YNI4	Uncharacterized protein. (1836 aa)
	A0A194YNN3	DUF5311 domain-containing protein. (1522 aa)
	A0A194YRG8	TPR_MLP1_2 domain-containing protein. (2002 aa)
	A0A1B6PG21	WD_REPEATS_REGION domain-containing protein. (359 aa)
	A0A1B6PMN6	RanBD1 domain-containing protein. (470 aa)
	A0A1B6Q710	Ubiquitin-like domain-containing protein. (137 aa)
	A0A1B6QB27	Uncharacterized protein. (1953 aa)
	A0A1W0W662	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (186 aa)
	A0A1B6QCX2	Uncharacterized protein. (489 aa)
	A0A1B6QF40	Ubiquitin-like domain-containing protein. (114 aa)
	A0A1B6QL55	Uncharacterized protein. (1319 aa)
	A0A1W0VSR3	Uncharacterized protein. (189 aa)
	A0A1W0VVX1	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (258 aa)
	A0A1W0W3B0	Uncharacterized protein. (239 aa)
	A0A1B6PAV8	Uncharacterized protein. (444 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YMH8	A0A194YNI4	A0A194YMH8	A0A194YNI4	Uncharacterized protein.	Uncharacterized protein.	0.765
A0A194YMH8	A0A194YNN3	A0A194YMH8	A0A194YNN3	Uncharacterized protein.	DUF5311 domain-containing protein.	0.652
A0A194YMH8	A0A1B6PAV8	A0A194YMH8	A0A1B6PAV8	Uncharacterized protein.	Uncharacterized protein.	0.712
A0A194YMH8	A0A1B6PG21	A0A194YMH8	A0A1B6PG21	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.656
A0A194YMH8	A0A1B6PMN6	A0A194YMH8	A0A1B6PMN6	Uncharacterized protein.	RanBD1 domain-containing protein.	0.709
A0A194YMH8	A0A1B6QB27	A0A194YMH8	A0A1B6QB27	Uncharacterized protein.	Uncharacterized protein.	0.603
A0A194YMH8	A0A1B6QCX2	A0A194YMH8	A0A1B6QCX2	Uncharacterized protein.	Uncharacterized protein.	0.689
A0A194YMH8	A0A1B6QL55	A0A194YMH8	A0A1B6QL55	Uncharacterized protein.	Uncharacterized protein.	0.790
A0A194YMH8	A0A1Z5RG10	A0A194YMH8	A0A1Z5RG10	Uncharacterized protein.	Uncharacterized protein.	0.628
A0A194YMH8	C5WSM7_SORBI	A0A194YMH8	C5WSM7	Uncharacterized protein.	Uncharacterized protein.	0.744
A0A194YMH8	C5WZT7_SORBI	A0A194YMH8	C5WZT7	Uncharacterized protein.	Nuclear pore protein.	0.772
A0A194YMH8	C5X481_SORBI	A0A194YMH8	C5X481	Uncharacterized protein.	Nup54 domain-containing protein.	0.707
A0A194YMH8	C5XEI1_SORBI	A0A194YMH8	C5XEI1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.656
A0A194YMH8	C5XK14_SORBI	A0A194YMH8	C5XK14	Uncharacterized protein.	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).	0.691
A0A194YMH8	C5XLT1_SORBI	A0A194YMH8	C5XLT1	Uncharacterized protein.	Nuclear pore complex protein NUP35.	0.583
A0A194YMH8	C5XR43_SORBI	A0A194YMH8	C5XR43	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein; Belongs to the WD repeat SEC13 family.	0.755
A0A194YMH8	C5Y713_SORBI	A0A194YMH8	C5Y713	Uncharacterized protein.	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).	0.790
A0A194YMH8	C5YFK4_SORBI	A0A194YMH8	C5YFK4	Uncharacterized protein.	Uncharacterized protein.	0.697
A0A194YMH8	C5Z1B7_SORBI	A0A194YMH8	C5Z1B7	Uncharacterized protein.	Nuclear pore complex protein NUP35.	0.583
A0A194YMH8	GATC	A0A194YMH8	C5WR30	Uncharacterized protein.	Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).	0.691

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