(47 nodes) N-glycan trimming in the ER and Calnexin/Calreticulin cycle network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5Y5Y5_SORBI	RING-CH-type domain-containing protein. (316 aa)
	C5XYW9_SORBI	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (579 aa)
	C5XTV5_SORBI	RING-CH-type domain-containing protein. (272 aa)
	C5XRG1_SORBI	RING-CH-type domain-containing protein. (560 aa)
	C5XQY9_SORBI	RING-CH-type domain-containing protein. (310 aa)
	C5XIY6_SORBI	Ubiquitin-like domain-containing protein. (155 aa)
	C5XET1_SORBI	Calreticulin. (408 aa)
	A0A1W0VYY7	RING-CH-type domain-containing protein. (312 aa)
	A0A1W0VYF0	RING-CH-type domain-containing protein. (222 aa)
	A0A1W0VXL0	Uncharacterized protein. (290 aa)
	A0A1B6QQ34	Uncharacterized protein. (366 aa)
	A0A1B6QK27	Ubiquitin-like domain-containing protein. (160 aa)
	A0A1B6QH35	Calreticulin. (426 aa)
	A0A1B6QCH2	RING-CH-type domain-containing protein. (279 aa)
	A0A1B6QAM8	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (871 aa)
	A0A1B6QA33	Calreticulin. (421 aa)
	A0A1B6Q7I3	RING-CH-type domain-containing protein. (212 aa)
	A0A1B6Q6D6	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (660 aa)
	A0A1B6Q376	RING-CH-type domain-containing protein. (230 aa)
	A0A1B6PT61	RING-CH-type domain-containing protein. (299 aa)
	A0A1B6PPE2	RING-CH-type domain-containing protein. (374 aa)
	C5XE76_SORBI	RING-CH-type domain-containing protein. (276 aa)
	A0A194YKH3	RING-CH-type domain-containing protein. (1086 aa)
	A0A194YQI5	RING-CH-type domain-containing protein. (259 aa)
	A0A194YT12	Uncharacterized protein. (1613 aa)
	A0A1B6P860	Glyco_hydro_85 domain-containing protein. (730 aa)
	A0A1B6P9W2	RING-CH-type domain-containing protein. (317 aa)
	A0A1B6PKJ4	Uncharacterized protein. (533 aa)
	A0A1B6PLR5	BHLH domain-containing protein. (160 aa)
	C5X988_SORBI	TGc domain-containing protein. (727 aa)
	C5WYC9_SORBI	RING-CH-type domain-containing protein. (406 aa)
	C5WV26_SORBI	Uncharacterized protein. (193 aa)
	C5WSR6_SORBI	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (917 aa)
	C5WN06_SORBI	RING-CH-type domain-containing protein. (314 aa)
	A0A1Z5SCB4	Uncharacterized protein. (356 aa)
	A0A1W0W3E5	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family. (755 aa)
	A0A1W0W169	Uncharacterized protein. (869 aa)
	A0A1W0W0G7	RING-CH-type domain-containing protein. (556 aa)
	A0A1W0W0F3	Uncharacterized protein. (76 aa)
	A0A1W0VZD1	RING-CH-type domain-containing protein. (166 aa)
	C5Z7U0_SORBI	RING-CH-type domain-containing protein. (483 aa)
	C5Z0S1_SORBI	Calreticulin. (422 aa)
	C5Z0N6_SORBI	Ubiquitin-like domain-containing protein. (155 aa)
	C5YYW9_SORBI	RING-CH-type domain-containing protein. (246 aa)
	C5YWD8_SORBI	RING-CH-type domain-containing protein. (205 aa)
	C5YUN6_SORBI	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family. (642 aa)
	C5YB96_SORBI	RING-CH-type domain-containing protein. (518 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YT12	A0A1B6PKJ4	A0A194YT12	A0A1B6PKJ4	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A194YT12	A0A1B6Q6D6	A0A194YT12	A0A1B6Q6D6	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.553
A0A194YT12	A0A1B6QA33	A0A194YT12	A0A1B6QA33	Uncharacterized protein.	Calreticulin.	0.438
A0A194YT12	A0A1B6QAM8	A0A194YT12	A0A1B6QAM8	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	0.724
A0A194YT12	A0A1B6QH35	A0A194YT12	A0A1B6QH35	Uncharacterized protein.	Calreticulin.	0.438
A0A194YT12	A0A1W0W169	A0A194YT12	A0A1W0W169	Uncharacterized protein.	Uncharacterized protein.	0.722
A0A194YT12	A0A1W0W3E5	A0A194YT12	A0A1W0W3E5	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	0.724
A0A194YT12	C5WSR6_SORBI	A0A194YT12	C5WSR6	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyl hydrolase 31 family.	0.724
A0A194YT12	C5WV26_SORBI	A0A194YT12	C5WV26	Uncharacterized protein.	Uncharacterized protein.	0.438
A0A194YT12	C5XET1_SORBI	A0A194YT12	C5XET1	Uncharacterized protein.	Calreticulin.	0.563
A0A194YT12	C5XYW9_SORBI	A0A194YT12	C5XYW9	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.553
A0A194YT12	C5YUN6_SORBI	A0A194YT12	C5YUN6	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.574
A0A194YT12	C5Z0S1_SORBI	A0A194YT12	C5Z0S1	Uncharacterized protein.	Calreticulin.	0.563
A0A1B6P860	A0A1B6QK27	A0A1B6P860	A0A1B6QK27	Glyco_hydro_85 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.595
A0A1B6P860	C5X988_SORBI	A0A1B6P860	C5X988	Glyco_hydro_85 domain-containing protein.	TGc domain-containing protein.	0.572
A0A1B6P860	C5XIY6_SORBI	A0A1B6P860	C5XIY6	Glyco_hydro_85 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.595
A0A1B6P860	C5Z0N6_SORBI	A0A1B6P860	C5Z0N6	Glyco_hydro_85 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.595
A0A1B6PKJ4	A0A194YT12	A0A1B6PKJ4	A0A194YT12	Uncharacterized protein.	Uncharacterized protein.	0.772
A0A1B6PKJ4	A0A1B6Q6D6	A0A1B6PKJ4	A0A1B6Q6D6	Uncharacterized protein.	alpha-1,2-Mannosidase; Belongs to the glycosyl hydrolase 47 family.	0.722
A0A1B6PKJ4	A0A1B6QA33	A0A1B6PKJ4	A0A1B6QA33	Uncharacterized protein.	Calreticulin.	0.890

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