(54 nodes) AMP-binding enzyme network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6PP80	Uncharacterized protein. (530 aa)
	A0A1B6PKW0	AMP-binding domain-containing protein. (545 aa)
	A0A1B6PKL7	Uncharacterized protein. (738 aa)
	A0A1B6PBC1	AMP-binding domain-containing protein. (698 aa)
	A0A1B6P687	AMP-binding domain-containing protein. (670 aa)
	A0A194YIF8	Uncharacterized protein. (633 aa)
	A0A194YHC1	AMP-binding domain-containing protein. (649 aa)
	C5Z8E3_SORBI	Uncharacterized protein. (558 aa)
	C5Z783_SORBI	Uncharacterized protein. (557 aa)
	C5Z4E9_SORBI	AMP-binding domain-containing protein. (649 aa)
	C5Z1M2_SORBI	Uncharacterized protein. (579 aa)
	C5YWE4_SORBI	AMP-binding domain-containing protein. (677 aa)
	C5YQ78_SORBI	AMP-binding domain-containing protein. (682 aa)
	C5YMX5_SORBI	Uncharacterized protein. (557 aa)
	C5YLR0_SORBI	Uncharacterized protein. (552 aa)
	C5YJI8_SORBI	Uncharacterized protein. (571 aa)
	C5YAG8_SORBI	Uncharacterized protein. (560 aa)
	C5Y0F9_SORBI	Uncharacterized protein. (566 aa)
	C5XW95_SORBI	Uncharacterized protein. (555 aa)
	C5XW17_SORBI	AMP-binding domain-containing protein. (411 aa)
	C5XTB7_SORBI	Acetyl-coenzyme A synthetase. (707 aa)
	C5XSE2_SORBI	Uncharacterized protein. (592 aa)
	C5XJK6_SORBI	Uncharacterized protein. (605 aa)
	C5XGR8_SORBI	AMP-binding domain-containing protein. (662 aa)
	C5XFF3_SORBI	Uncharacterized protein. (555 aa)
	C5XFA1_SORBI	AMP-binding domain-containing protein. (655 aa)
	C5X8C9_SORBI	Uncharacterized protein. (555 aa)
	C5X7R0_SORBI	AMP-binding domain-containing protein. (153 aa)
	C5X7A2_SORBI	Uncharacterized protein. (553 aa)
	C5WZV3_SORBI	Uncharacterized protein. (553 aa)
	C5WZU1_SORBI	Uncharacterized protein. (554 aa)
	C5WW74_SORBI	AMP-binding domain-containing protein. (731 aa)
	C5WMI4_SORBI	Uncharacterized protein. (568 aa)
	C5WMI3_SORBI	Uncharacterized protein. (581 aa)
	A0A1Z5SBJ4	Uncharacterized protein. (576 aa)
	A0A1Z5S6P3	Uncharacterized protein. (557 aa)
	A0A1Z5RH07	AMP-binding domain-containing protein. (697 aa)
	A0A1Z5RFW5	AMP-binding domain-containing protein. (723 aa)
	A0A1W0W4J0	Uncharacterized protein. (245 aa)
	A0A1W0W1Q8	Uncharacterized protein. (598 aa)
	A0A1W0VZQ2	Uncharacterized protein. (633 aa)
	A0A1W0VYL7	AMP-binding domain-containing protein. (740 aa)
	A0A1W0VR07	Uncharacterized protein. (947 aa)
	A0A1B6QQP6	Uncharacterized protein. (632 aa)
	A0A1B6QQP4	Uncharacterized protein. (649 aa)
	A0A1B6QQG1	Uncharacterized protein. (553 aa)
	A0A1B6QLK8	Uncharacterized protein. (573 aa)
	A0A1B6QJR8	Uncharacterized protein. (563 aa)
	A0A1B6QGT9	AMP-binding domain-containing protein. (738 aa)
	A0A1B6QCA1	Uncharacterized protein. (722 aa)
	A0A1B6PSR5	Uncharacterized protein. (665 aa)
	A0A1B6PPY6	Uncharacterized protein. (697 aa)
	A0A1B6PPQ8	AMP-binding domain-containing protein. (726 aa)
	A0A1B6PLI9	Uncharacterized protein. (2410 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YHC1	A0A1B6P687	A0A194YHC1	A0A1B6P687	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.610
A0A194YHC1	A0A1B6PBC1	A0A194YHC1	A0A1B6PBC1	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.751
A0A194YHC1	A0A1B6PPQ8	A0A194YHC1	A0A1B6PPQ8	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.750
A0A194YHC1	A0A1B6PPY6	A0A194YHC1	A0A1B6PPY6	AMP-binding domain-containing protein.	Uncharacterized protein.	0.625
A0A194YHC1	A0A1B6PSR5	A0A194YHC1	A0A1B6PSR5	AMP-binding domain-containing protein.	Uncharacterized protein.	0.608
A0A194YHC1	A0A1B6QGT9	A0A194YHC1	A0A1B6QGT9	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.676
A0A194YHC1	A0A1W0VR07	A0A194YHC1	A0A1W0VR07	AMP-binding domain-containing protein.	Uncharacterized protein.	0.566
A0A194YHC1	A0A1Z5RFW5	A0A194YHC1	A0A1Z5RFW5	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.607
A0A194YHC1	A0A1Z5RH07	A0A194YHC1	A0A1Z5RH07	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.752
A0A194YHC1	C5XFA1_SORBI	A0A194YHC1	C5XFA1	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.605
A0A194YHC1	C5XGR8_SORBI	A0A194YHC1	C5XGR8	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.605
A0A194YHC1	C5YQ78_SORBI	A0A194YHC1	C5YQ78	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.623
A0A194YHC1	C5Z4E9_SORBI	A0A194YHC1	C5Z4E9	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.602
A0A194YIF8	A0A1B6PKL7	A0A194YIF8	A0A1B6PKL7	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A194YIF8	A0A1B6QCA1	A0A194YIF8	A0A1B6QCA1	Uncharacterized protein.	Uncharacterized protein.	0.473
A0A194YIF8	A0A1W0VR07	A0A194YIF8	A0A1W0VR07	Uncharacterized protein.	Uncharacterized protein.	0.746
A0A194YIF8	C5WW74_SORBI	A0A194YIF8	C5WW74	Uncharacterized protein.	AMP-binding domain-containing protein.	0.473
A0A194YIF8	C5XTB7_SORBI	A0A194YIF8	C5XTB7	Uncharacterized protein.	Acetyl-coenzyme A synthetase.	0.473
A0A1B6P687	A0A194YHC1	A0A1B6P687	A0A194YHC1	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.610
A0A1B6P687	A0A1B6PBC1	A0A1B6P687	A0A1B6PBC1	AMP-binding domain-containing protein.	AMP-binding domain-containing protein.	0.750

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