(7 nodes) XS zinc finger domain network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5YTI3_SORBI	Uncharacterized protein. (587 aa)
	C5Z0G9_SORBI	Uncharacterized protein. (624 aa)
	A0A1B6PFH4	Uncharacterized protein. (635 aa)
	A0A1B6QJI3	Uncharacterized protein. (628 aa)
	C5XEH0_SORBI	Uncharacterized protein. (629 aa)
	C5XQ09_SORBI	Uncharacterized protein. (693 aa)
	C5YTI1_SORBI	Uncharacterized protein. (590 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6QJI3	C5YTI1_SORBI	A0A1B6QJI3	C5YTI1	Uncharacterized protein.	Uncharacterized protein.	0.402
A0A1B6QJI3	C5YTI3_SORBI	A0A1B6QJI3	C5YTI3	Uncharacterized protein.	Uncharacterized protein.	0.419
C5XEH0_SORBI	C5YTI1_SORBI	C5XEH0	C5YTI1	Uncharacterized protein.	Uncharacterized protein.	0.444
C5XEH0_SORBI	C5YTI3_SORBI	C5XEH0	C5YTI3	Uncharacterized protein.	Uncharacterized protein.	0.471
C5XQ09_SORBI	C5YTI1_SORBI	C5XQ09	C5YTI1	Uncharacterized protein.	Uncharacterized protein.	0.439
C5XQ09_SORBI	C5YTI3_SORBI	C5XQ09	C5YTI3	Uncharacterized protein.	Uncharacterized protein.	0.473
C5YTI1_SORBI	A0A1B6QJI3	C5YTI1	A0A1B6QJI3	Uncharacterized protein.	Uncharacterized protein.	0.402
C5YTI1_SORBI	C5XEH0_SORBI	C5YTI1	C5XEH0	Uncharacterized protein.	Uncharacterized protein.	0.444
C5YTI1_SORBI	C5XQ09_SORBI	C5YTI1	C5XQ09	Uncharacterized protein.	Uncharacterized protein.	0.439
C5YTI1_SORBI	C5Z0G9_SORBI	C5YTI1	C5Z0G9	Uncharacterized protein.	Uncharacterized protein.	0.408
C5YTI3_SORBI	A0A1B6QJI3	C5YTI3	A0A1B6QJI3	Uncharacterized protein.	Uncharacterized protein.	0.419
C5YTI3_SORBI	C5XEH0_SORBI	C5YTI3	C5XEH0	Uncharacterized protein.	Uncharacterized protein.	0.471
C5YTI3_SORBI	C5XQ09_SORBI	C5YTI3	C5XQ09	Uncharacterized protein.	Uncharacterized protein.	0.473
C5YTI3_SORBI	C5Z0G9_SORBI	C5YTI3	C5Z0G9	Uncharacterized protein.	Uncharacterized protein.	0.429
C5Z0G9_SORBI	C5YTI1_SORBI	C5Z0G9	C5YTI1	Uncharacterized protein.	Uncharacterized protein.	0.408
C5Z0G9_SORBI	C5YTI3_SORBI	C5Z0G9	C5YTI3	Uncharacterized protein.	Uncharacterized protein.	0.429

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