(44 nodes) (2017) A Combined Comparative Transcriptomic, Metabolomic, and Anatomical Analyses of Two Key Domestication Traits: Pod Dehiscence and Seed Dormancy in Pea (Pisum sp.). network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C5XMD5_SORBI	Pectate lyase. (373 aa)
	A0A1B6PAB3	Uncharacterized protein. (473 aa)
	A0A1B6PAZ7	Pectate lyase. (277 aa)
	A0A1B6PC94	Pectate lyase. (368 aa)
	A0A1B6PJF1	Pectate lyase. (484 aa)
	A0A1B6PND3	Epimerase domain-containing protein. (345 aa)
	A0A1B6PND6	Epimerase domain-containing protein. (343 aa)
	A0A1B6PND9	Epimerase domain-containing protein. (346 aa)
	A0A1B6Q7M7	Uncharacterized protein. (272 aa)
	A0A1B6QK61	Uncharacterized protein; Belongs to the cytochrome P450 family. (548 aa)
	A0A1B6QKH6	Pectate lyase. (482 aa)
	A0A1B6QLK8	Uncharacterized protein. (573 aa)
	A0A1B6QQG1	Uncharacterized protein. (553 aa)
	A0A1W0VRA4	Pectate lyase. (442 aa)
	A0A1Z5RF54	Epimerase domain-containing protein. (388 aa)
	A0A1Z5RPI2	Uncharacterized protein; Belongs to the cytochrome P450 family. (494 aa)
	A0A1Z5S6P3	Uncharacterized protein. (557 aa)
	C5WYQ8_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (532 aa)
	C5WYQ9_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (527 aa)
	C5X7U3_SORBI	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (706 aa)
	C5XFF3_SORBI	Uncharacterized protein. (555 aa)
	C5XJK6_SORBI	Uncharacterized protein. (605 aa)
	C5XN69_SORBI	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (279 aa)
	C5XND6_SORBI	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (311 aa)
	C5XNM6_SORBI	Uncharacterized protein. (481 aa)
	C5XP30_SORBI	Pectate lyase. (364 aa)
	C5XRG4_SORBI	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family. (399 aa)
	C5XW95_SORBI	Uncharacterized protein. (555 aa)
	C5XWK5_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (536 aa)
	C5XY12_SORBI	Pectate lyase. (445 aa)
	C5Y0F9_SORBI	Uncharacterized protein. (566 aa)
	CYP71AM1	Cytochrome P450 monooxygenase; Belongs to the cytochrome P450 family. (528 aa)
	C5Y9G6_SORBI	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (694 aa)
	C5YDX4_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (538 aa)
	C5YGM0_SORBI	Epimerase domain-containing protein. (340 aa)
	C5YGM2_SORBI	Epimerase domain-containing protein. (341 aa)
	C5YJG8_SORBI	NADPH--cytochrome P450 reductase; This enzyme is required for electron transfer from NADP to cytochrome P450 in microsomes. It can also provide electron transfer to heme oxygenase and cytochrome B5; In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (706 aa)
	C5YJI8_SORBI	Uncharacterized protein. (571 aa)
	C5YLR0_SORBI	Uncharacterized protein. (552 aa)
	C5YZX1_SORBI	NADH-cytochrome b5 reductase; Belongs to the flavoprotein pyridine nucleotide cytochrome reductase family. (279 aa)
	C5Z3W2_SORBI	Pectate lyase. (465 aa)
	C5Z561_SORBI	Pectate lyase. (454 aa)
	CYP71AF1	Cytochrome P450 monooxygenase; Belongs to the cytochrome P450 family. (513 aa)
	C5Z783_SORBI	Uncharacterized protein. (557 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6PND3	A0A1B6QLK8	A0A1B6PND3	A0A1B6QLK8	Epimerase domain-containing protein.	Uncharacterized protein.	0.475
A0A1B6PND3	A0A1B6QQG1	A0A1B6PND3	A0A1B6QQG1	Epimerase domain-containing protein.	Uncharacterized protein.	0.481
A0A1B6PND3	A0A1Z5S6P3	A0A1B6PND3	A0A1Z5S6P3	Epimerase domain-containing protein.	Uncharacterized protein.	0.488
A0A1B6PND3	C5WYQ8_SORBI	A0A1B6PND3	C5WYQ8	Epimerase domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.643
A0A1B6PND3	C5WYQ9_SORBI	A0A1B6PND3	C5WYQ9	Epimerase domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.643
A0A1B6PND3	C5XFF3_SORBI	A0A1B6PND3	C5XFF3	Epimerase domain-containing protein.	Uncharacterized protein.	0.488
A0A1B6PND3	C5XJK6_SORBI	A0A1B6PND3	C5XJK6	Epimerase domain-containing protein.	Uncharacterized protein.	0.481
A0A1B6PND3	C5XRG4_SORBI	A0A1B6PND3	C5XRG4	Epimerase domain-containing protein.	Fe2OG dioxygenase domain-containing protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.966
A0A1B6PND3	C5XW95_SORBI	A0A1B6PND3	C5XW95	Epimerase domain-containing protein.	Uncharacterized protein.	0.488
A0A1B6PND3	C5Y0F9_SORBI	A0A1B6PND3	C5Y0F9	Epimerase domain-containing protein.	Uncharacterized protein.	0.488
A0A1B6PND3	C5YJI8_SORBI	A0A1B6PND3	C5YJI8	Epimerase domain-containing protein.	Uncharacterized protein.	0.488
A0A1B6PND3	C5YLR0_SORBI	A0A1B6PND3	C5YLR0	Epimerase domain-containing protein.	Uncharacterized protein.	0.488
A0A1B6PND3	C5Z783_SORBI	A0A1B6PND3	C5Z783	Epimerase domain-containing protein.	Uncharacterized protein.	0.475
A0A1B6PND6	A0A1B6QLK8	A0A1B6PND6	A0A1B6QLK8	Epimerase domain-containing protein.	Uncharacterized protein.	0.475
A0A1B6PND6	A0A1B6QQG1	A0A1B6PND6	A0A1B6QQG1	Epimerase domain-containing protein.	Uncharacterized protein.	0.481
A0A1B6PND6	A0A1Z5S6P3	A0A1B6PND6	A0A1Z5S6P3	Epimerase domain-containing protein.	Uncharacterized protein.	0.481
A0A1B6PND6	C5WYQ8_SORBI	A0A1B6PND6	C5WYQ8	Epimerase domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.643
A0A1B6PND6	C5WYQ9_SORBI	A0A1B6PND6	C5WYQ9	Epimerase domain-containing protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.643
A0A1B6PND6	C5XFF3_SORBI	A0A1B6PND6	C5XFF3	Epimerase domain-containing protein.	Uncharacterized protein.	0.475
A0A1B6PND6	C5XJK6_SORBI	A0A1B6PND6	C5XJK6	Epimerase domain-containing protein.	Uncharacterized protein.	0.481

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