(33 nodes) (2018) Analysis of the resistance mechanisms in sugarcane during Sporisorium scitamineum infection using RNA-seq and microscopy. network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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textmining

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protein homology

Your Input:
	C5XPR0_SORBI	PPM-type phosphatase domain-containing protein. (412 aa)
	PR10-4	Pathogenesis-related protein 10a; Belongs to the BetVI family. (160 aa)
	PR10-3	Pathogenesis-related protein 10c; Belongs to the BetVI family. (159 aa)
	PR10-2	Pathogenesis-related protein 10d; Belongs to the BetVI family. (160 aa)
	PR10	Pathogenesis-related protein 10b; Belongs to the BetVI family. (160 aa)
	C5Z5X2_SORBI	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (472 aa)
	C5YC95_SORBI	PPM-type phosphatase domain-containing protein. (489 aa)
	C5Y999_SORBI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (924 aa)
	C5Y4K6_SORBI	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (474 aa)
	A0A194YND7	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (917 aa)
	A0A1B6P9T6	PPM-type phosphatase domain-containing protein. (380 aa)
	A0A1B6PAM8	PPM-type phosphatase domain-containing protein. (428 aa)
	A0A1B6PEP8	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (857 aa)
	A0A1B6PNR0	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (907 aa)
	A0A1B6Q533	PPM-type phosphatase domain-containing protein. (474 aa)
	A0A1B6QIN6	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (893 aa)
	A0A1W0VVF0	PPM-type phosphatase domain-containing protein. (399 aa)
	A0A1W0VZ61	PPM-type phosphatase domain-containing protein. (383 aa)
	A0A1Z5R3V2	PPM-type phosphatase domain-containing protein. (395 aa)
	A0A1Z5R4L5	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (483 aa)
	A0A1Z5RBV5	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (865 aa)
	A0A1Z5RHN4	Uncharacterized protein. (479 aa)
	C5WNU8_SORBI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (888 aa)
	C5WNU9_SORBI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (866 aa)
	C5WQ29_SORBI	PPM-type phosphatase domain-containing protein. (401 aa)
	C5WVT3_SORBI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (924 aa)
	C5X357_SORBI	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (728 aa)
	C5X361_SORBI	Uncharacterized protein; Belongs to the glycosyltransferase 2 family. (755 aa)
	C5X9V1_SORBI	PPM-type phosphatase domain-containing protein. (357 aa)
	C5XDX5_SORBI	Glycosyltransferase; Belongs to the UDP-glycosyltransferase family. (450 aa)
	C5XES4_SORBI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (868 aa)
	C5XES7_SORBI	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding. (873 aa)
	C5XNV3_SORBI	PPM-type phosphatase domain-containing protein. (482 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YND7	A0A1B6PNR0	A0A194YND7	A0A1B6PNR0	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.692
A0A194YND7	A0A1B6QIN6	A0A194YND7	A0A1B6QIN6	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.685
A0A194YND7	C5WNU8_SORBI	A0A194YND7	C5WNU8	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.685
A0A194YND7	C5WNU9_SORBI	A0A194YND7	C5WNU9	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.666
A0A194YND7	C5XES4_SORBI	A0A194YND7	C5XES4	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.668
A0A194YND7	C5XES7_SORBI	A0A194YND7	C5XES7	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.669
A0A194YND7	PR10	A0A194YND7	Q4VQB2	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10b; Belongs to the BetVI family.	0.420
A0A194YND7	PR10-2	A0A194YND7	Q4VQB3	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10d; Belongs to the BetVI family.	0.420
A0A194YND7	PR10-3	A0A194YND7	Q4VQB4	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10c; Belongs to the BetVI family.	0.420
A0A194YND7	PR10-4	A0A194YND7	Q4VQB5	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10a; Belongs to the BetVI family.	0.420
A0A1B6PEP8	A0A1B6PNR0	A0A1B6PEP8	A0A1B6PNR0	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.675
A0A1B6PEP8	A0A1B6QIN6	A0A1B6PEP8	A0A1B6QIN6	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.665
A0A1B6PEP8	C5WNU8_SORBI	A0A1B6PEP8	C5WNU8	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.663
A0A1B6PEP8	C5WNU9_SORBI	A0A1B6PEP8	C5WNU9	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.664
A0A1B6PEP8	C5XES4_SORBI	A0A1B6PEP8	C5XES4	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.664
A0A1B6PEP8	C5XES7_SORBI	A0A1B6PEP8	C5XES7	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	0.665
A0A1B6PEP8	PR10	A0A1B6PEP8	Q4VQB2	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10b; Belongs to the BetVI family.	0.420
A0A1B6PEP8	PR10-2	A0A1B6PEP8	Q4VQB3	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10d; Belongs to the BetVI family.	0.420
A0A1B6PEP8	PR10-3	A0A1B6PEP8	Q4VQB4	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10c; Belongs to the BetVI family.	0.420
A0A1B6PEP8	PR10-4	A0A1B6PEP8	Q4VQB5	Lipoxygenase; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding.	Pathogenesis-related protein 10a; Belongs to the BetVI family.	0.420

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