(28 nodes) (2023) Silage maize as a potent candidate for sustainable animal husbandry development-perspectives and strategies for genetic enhancement. network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C4H	Cinnamic acid 4-hydroxylase; Belongs to the cytochrome P450 family. (501 aa)
	A0A1Z5RDZ8	Phenylalanine ammonia-lyase. (714 aa)
	A0A1Z5S6P3	Uncharacterized protein. (557 aa)
	C5WS41_SORBI	Phenylalanine ammonia-lyase. (709 aa)
	C5WW82_SORBI	Uncharacterized protein; Belongs to the cytochrome P450 family. (529 aa)
	A0A1B6QLK8	Uncharacterized protein. (573 aa)
	C5X951_SORBI	Uncharacterized protein. (967 aa)
	C5XEX3_SORBI	Uncharacterized protein. (1038 aa)
	C5XFF3_SORBI	Uncharacterized protein. (555 aa)
	C5XJK6_SORBI	Uncharacterized protein. (605 aa)
	A0A1B6Q660	Uncharacterized protein. (966 aa)
	A0A1B6QQG1	Uncharacterized protein. (553 aa)
	C5Z451_SORBI	Uncharacterized protein. (1028 aa)
	C5Z783_SORBI	Uncharacterized protein. (557 aa)
	C5XW95_SORBI	Uncharacterized protein. (555 aa)
	C5XWK7_SORBI	Methyltransf_2 domain-containing protein. (377 aa)
	C5XXT8_SORBI	Phenylalanine ammonia-lyase. (704 aa)
	C5XXT9_SORBI	Phenylalanine ammonia-lyase. (718 aa)
	C5XXU0_SORBI	Phenylalanine ammonia-lyase. (714 aa)
	C5XXU3_SORBI	Phenylalanine ammonia-lyase. (714 aa)
	C5XYZ9_SORBI	Uncharacterized protein. (960 aa)
	C5Y0F9_SORBI	Uncharacterized protein. (566 aa)
	C5YCD6_SORBI	Phenylalanine ammonia-lyase. (703 aa)
	C5YH12_SORBI	Caffeic acid O-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family. (362 aa)
	C5YJI8_SORBI	Uncharacterized protein. (571 aa)
	C5YK81_SORBI	Uncharacterized protein. (964 aa)
	C5YLR0_SORBI	Uncharacterized protein. (552 aa)
	Dof1	Dof-type zinc finger protein 1. (275 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1B6Q660	Dof1	A0A1B6Q660	C5YQW3	Uncharacterized protein.	Dof-type zinc finger protein 1.	0.422
A0A1B6QLK8	A0A1Z5RDZ8	A0A1B6QLK8	A0A1Z5RDZ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.865
A0A1B6QLK8	C4H	A0A1B6QLK8	Q94IP1	Uncharacterized protein.	Cinnamic acid 4-hydroxylase; Belongs to the cytochrome P450 family.	0.873
A0A1B6QLK8	C5WS41_SORBI	A0A1B6QLK8	C5WS41	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.865
A0A1B6QLK8	C5WW82_SORBI	A0A1B6QLK8	C5WW82	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.910
A0A1B6QLK8	C5XWK7_SORBI	A0A1B6QLK8	C5XWK7	Uncharacterized protein.	Methyltransf_2 domain-containing protein.	0.420
A0A1B6QLK8	C5XXT8_SORBI	A0A1B6QLK8	C5XXT8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.865
A0A1B6QLK8	C5XXT9_SORBI	A0A1B6QLK8	C5XXT9	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.865
A0A1B6QLK8	C5XXU0_SORBI	A0A1B6QLK8	C5XXU0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.865
A0A1B6QLK8	C5XXU3_SORBI	A0A1B6QLK8	C5XXU3	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.865
A0A1B6QLK8	C5YCD6_SORBI	A0A1B6QLK8	C5YCD6	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.865
A0A1B6QLK8	C5YH12_SORBI	A0A1B6QLK8	C5YH12	Uncharacterized protein.	Caffeic acid O-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.	0.422
A0A1B6QQG1	A0A1Z5RDZ8	A0A1B6QQG1	A0A1Z5RDZ8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.881
A0A1B6QQG1	C4H	A0A1B6QQG1	Q94IP1	Uncharacterized protein.	Cinnamic acid 4-hydroxylase; Belongs to the cytochrome P450 family.	0.918
A0A1B6QQG1	C5WS41_SORBI	A0A1B6QQG1	C5WS41	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.881
A0A1B6QQG1	C5WW82_SORBI	A0A1B6QQG1	C5WW82	Uncharacterized protein.	Uncharacterized protein; Belongs to the cytochrome P450 family.	0.927
A0A1B6QQG1	C5XWK7_SORBI	A0A1B6QQG1	C5XWK7	Uncharacterized protein.	Methyltransf_2 domain-containing protein.	0.502
A0A1B6QQG1	C5XXT8_SORBI	A0A1B6QQG1	C5XXT8	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.886
A0A1B6QQG1	C5XXT9_SORBI	A0A1B6QQG1	C5XXT9	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.912
A0A1B6QQG1	C5XXU0_SORBI	A0A1B6QQG1	C5XXU0	Uncharacterized protein.	Phenylalanine ammonia-lyase.	0.881

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