(23 nodes) A domain family that is part of the cupin metalloenzyme superfamily. network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A1B6Q7Q4	Uncharacterized protein. (1345 aa)
	A0A1B6P7P8	Uncharacterized protein. (643 aa)
	A0A194YT50	Uncharacterized protein. (1144 aa)
	A0A194YRU3	Uncharacterized protein. (793 aa)
	A0A194YM35	JmjC domain-containing protein. (1023 aa)
	A0A194YII6	Uncharacterized protein. (1250 aa)
	C5Y4W2_SORBI	Uncharacterized protein. (497 aa)
	SORBI_K001900	Uncharacterized protein. (1418 aa)
	C5XV72_SORBI	Uncharacterized protein. (1221 aa)
	C5XLK9_SORBI	JmjC domain-containing protein. (542 aa)
	C5X786_SORBI	Uncharacterized protein. (590 aa)
	C5X3U8_SORBI	JmjC domain-containing protein. (366 aa)
	C5X0L5_SORBI	Uncharacterized protein. (891 aa)
	A0A1Z5S9S8	Uncharacterized protein. (957 aa)
	A0A1Z5S895	Uncharacterized protein. (852 aa)
	A0A1Z5S647	Uncharacterized protein. (1127 aa)
	A0A1Z5RBW3	JmjC domain-containing protein. (438 aa)
	A0A1Z5R9P0	JmjC domain-containing protein. (698 aa)
	A0A1W0VY05	JmjC domain-containing protein. (486 aa)
	A0A1W0VV88	Uncharacterized protein. (1900 aa)
	A0A1B6QQG3	Uncharacterized protein. (1474 aa)
	A0A1B6QDB2	JmjC domain-containing protein. (467 aa)
	A0A1B6QCE1	JmjC domain-containing protein. (913 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YRU3	C5XLK9_SORBI	A0A194YRU3	C5XLK9	Uncharacterized protein.	JmjC domain-containing protein.	0.506
A0A1B6Q7Q4	C5X3U8_SORBI	A0A1B6Q7Q4	C5X3U8	Uncharacterized protein.	JmjC domain-containing protein.	0.513
A0A1W0VY05	C5X3U8_SORBI	A0A1W0VY05	C5X3U8	JmjC domain-containing protein.	JmjC domain-containing protein.	0.583
A0A1Z5S895	C5XLK9_SORBI	A0A1Z5S895	C5XLK9	Uncharacterized protein.	JmjC domain-containing protein.	0.506
C5X3U8_SORBI	A0A1B6Q7Q4	C5X3U8	A0A1B6Q7Q4	JmjC domain-containing protein.	Uncharacterized protein.	0.513
C5X3U8_SORBI	A0A1W0VY05	C5X3U8	A0A1W0VY05	JmjC domain-containing protein.	JmjC domain-containing protein.	0.583
C5XLK9_SORBI	A0A194YRU3	C5XLK9	A0A194YRU3	JmjC domain-containing protein.	Uncharacterized protein.	0.506
C5XLK9_SORBI	A0A1Z5S895	C5XLK9	A0A1Z5S895	JmjC domain-containing protein.	Uncharacterized protein.	0.506

Server load: low (16%) [HD]

Permalink

Network

Cooccurrence

Textmining

Coexpression

Experiments

Neighborhood

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About