(42 nodes) Lysine degradation network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YIH8	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (556 aa)
	A0A1B6PEL7	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	A0A1B6PKV0	SET domain-containing protein. (637 aa)
	A0A1B6PQI9	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (478 aa)
	A0A1B6Q2G4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (421 aa)
	A0A1B6Q3D8	Uncharacterized protein. (561 aa)
	A0A1B6QKV8	SET domain-containing protein. (303 aa)
	A0A1B6QMR1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family. (401 aa)
	A0A1W0W183	Uncharacterized protein. (694 aa)
	A0A1W0W4H6	Uncharacterized protein; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. SET2 subfamily. (373 aa)
	A0A1W0W5S6	DAO domain-containing protein. (521 aa)
	A0A1Z5REV8	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (496 aa)
	A0A1Z5SAV0	Lipoyl-binding domain-containing protein. (467 aa)
	C5WMF3_SORBI	Uncharacterized protein. (268 aa)
	C5WMG6_SORBI	Enhancer of zeste-like protein 3. (899 aa)
	C5WNS1_SORBI	Uncharacterized protein. (482 aa)
	C5X4K6_SORBI	DAO domain-containing protein. (421 aa)
	C5X500_SORBI	Uncharacterized protein. (710 aa)
	C5XAP1_SORBI	Uncharacterized protein. (1246 aa)
	C5XDD8_SORBI	Uncharacterized protein. (830 aa)
	C5XDP9_SORBI	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family. (509 aa)
	C5XFN4_SORBI	DAO domain-containing protein. (413 aa)
	C5XIL7_SORBI	DAO domain-containing protein. (419 aa)
	C5XIV6_SORBI	DAO domain-containing protein. (414 aa)
	C5XIV7_SORBI	DAO domain-containing protein. (412 aa)
	C5XIY9_SORBI	Dihydrolipoyl dehydrogenase. (504 aa)
	C5XLJ3_SORBI	Uncharacterized protein. (339 aa)
	C5XN45_SORBI	Uncharacterized protein. (742 aa)
	C5XS18_SORBI	Uncharacterized protein. (787 aa)
	C5XS38_SORBI	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (486 aa)
	C5XTQ3_SORBI	Uncharacterized protein. (1060 aa)
	C5YC42_SORBI	Uncharacterized protein. (819 aa)
	C5YD31_SORBI	Uncharacterized protein. (891 aa)
	C5YHX1_SORBI	SET domain-containing protein. (2264 aa)
	C5YII0_SORBI	SET domain-containing protein. (404 aa)
	C5YKQ5_SORBI	Uncharacterized protein. (1260 aa)
	C5YMQ8_SORBI	Uncharacterized protein. (666 aa)
	C5YST8_SORBI	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (487 aa)
	C5Z079_SORBI	Uncharacterized protein. (674 aa)
	C5Z0L0_SORBI	Dihydrolipoyl dehydrogenase. (562 aa)
	C5Z0N4_SORBI	Dihydrolipoyl dehydrogenase. (500 aa)
	ALDH2a	Mitochondrial aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (551 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YIH8	A0A1B6PEL7	A0A194YIH8	A0A1B6PEL7	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.569
A0A194YIH8	A0A1B6Q2G4	A0A194YIH8	A0A1B6Q2G4	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.606
A0A194YIH8	A0A1B6Q3D8	A0A194YIH8	A0A1B6Q3D8	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein.	0.453
A0A194YIH8	A0A1B6QMR1	A0A194YIH8	A0A1B6QMR1	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.569
A0A194YIH8	A0A1Z5SAV0	A0A194YIH8	A0A1Z5SAV0	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Lipoyl-binding domain-containing protein.	0.648
A0A194YIH8	C5XIY9_SORBI	A0A194YIH8	C5XIY9	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Dihydrolipoyl dehydrogenase.	0.453
A0A194YIH8	C5Z0L0_SORBI	A0A194YIH8	C5Z0L0	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Dihydrolipoyl dehydrogenase.	0.453
A0A194YIH8	C5Z0N4_SORBI	A0A194YIH8	C5Z0N4	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	Dihydrolipoyl dehydrogenase.	0.453
A0A1B6PEL7	A0A194YIH8	A0A1B6PEL7	A0A194YIH8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.569
A0A1B6PEL7	A0A1B6PQI9	A0A1B6PEL7	A0A1B6PQI9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.507
A0A1B6PEL7	A0A1B6Q2G4	A0A1B6PEL7	A0A1B6Q2G4	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.901
A0A1B6PEL7	A0A1B6QMR1	A0A1B6PEL7	A0A1B6QMR1	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.900
A0A1B6PEL7	A0A1Z5REV8	A0A1B6PEL7	A0A1Z5REV8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.507
A0A1B6PEL7	A0A1Z5SAV0	A0A1B6PEL7	A0A1Z5SAV0	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Lipoyl-binding domain-containing protein.	0.844
A0A1B6PEL7	ALDH2a	A0A1B6PEL7	Q8LST5	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Mitochondrial aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.468
A0A1B6PEL7	C5WMF3_SORBI	A0A1B6PEL7	C5WMF3	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Uncharacterized protein.	0.851
A0A1B6PEL7	C5XDP9_SORBI	A0A1B6PEL7	C5XDP9	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldedh domain-containing protein; Belongs to the aldehyde dehydrogenase family.	0.497
A0A1B6PEL7	C5XS38_SORBI	A0A1B6PEL7	C5XS38	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.507
A0A1B6PEL7	C5YST8_SORBI	A0A1B6PEL7	C5YST8	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.507
A0A1B6PQI9	A0A1B6PEL7	A0A1B6PQI9	A0A1B6PEL7	Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.	Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.	0.507

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