(48 nodes) Phenylalanine, tyrosine and tryptophan biosynthesis network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YLE2	PALP domain-containing protein. (494 aa)
	A0A194YLK4	Prephenate/arogenate dehydrogenase domain-containing protein. (836 aa)
	A0A194YNT6	Aspartate aminotransferase. (430 aa)
	A0A194YSF0	Uncharacterized protein. (330 aa)
	A0A194YSX5	Aminotran_1_2 domain-containing protein. (459 aa)
	A0A1B6PD58	Uncharacterized protein. (532 aa)
	A0A1B6PDJ7	Uncharacterized protein. (527 aa)
	A0A1B6PLE2	Glutamine amidotransferase type-1 domain-containing protein. (281 aa)
	A0A1B6PSM5	Aminotran_1_2 domain-containing protein. (438 aa)
	A0A1B6Q670	Aspartate aminotransferase. (459 aa)
	A0A1B6Q798	Aminotran_1_2 domain-containing protein. (456 aa)
	A0A1B6QH50	Uncharacterized protein. (577 aa)
	A0A1B6QP78	Uncharacterized protein. (604 aa)
	A0A1B6QQU6	Uncharacterized protein. (390 aa)
	A0A1W0VY74	Aminotran_1_2 domain-containing protein. (428 aa)
	A0A1W0W498	IGPS domain-containing protein. (403 aa)
	A0A1Z5RJK9	Aminotran_1_2 domain-containing protein. (466 aa)
	A0A1Z5RL71	Chorismate mutase. (254 aa)
	A0A1Z5S4F7	Uncharacterized protein; Belongs to the TrpA family. (141 aa)
	A0A1Z5S8L7	Prephenate dehydratase domain-containing protein. (418 aa)
	C5WN01_SORBI	Glutamine amidotransferase type-1 domain-containing protein. (267 aa)
	C5WNL7_SORBI	Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (385 aa)
	C5WQV1_SORBI	Chorismate synthase. (440 aa)
	C5WRG8_SORBI	Phospho-2-dehydro-3-deoxyheptonate aldolase. (499 aa)
	C5WXQ3_SORBI	Phospho-2-dehydro-3-deoxyheptonate aldolase. (551 aa)
	C5X2H5_SORBI	Phospho-2-dehydro-3-deoxyheptonate aldolase. (540 aa)
	C5X5W2_SORBI	Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (438 aa)
	C5X6V7_SORBI	DHQ_synthase domain-containing protein. (438 aa)
	C5XB29_SORBI	Uncharacterized protein; Belongs to the TrpA family. (320 aa)
	C5XKW2_SORBI	Uncharacterized protein. (350 aa)
	C5XLB0_SORBI	Uncharacterized protein. (509 aa)
	C5XZK5_SORBI	PRAI domain-containing protein. (268 aa)
	C5Y092_SORBI	Aminotran_1_2 domain-containing protein. (417 aa)
	C5Y188_SORBI	IGPS domain-containing protein. (380 aa)
	C5Y4D8_SORBI	Aminotran_1_2 domain-containing protein. (442 aa)
	C5Y4D9_SORBI	Aminotran_1_2 domain-containing protein. (430 aa)
	C5Y8Y1_SORBI	Uncharacterized protein. (300 aa)
	C5YA91_SORBI	IGPS domain-containing protein. (422 aa)
	C5YFR9_SORBI	Arogenate dehydratase; Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine. (432 aa)
	C5YJF0_SORBI	IGPS domain-containing protein. (382 aa)
	C5YJQ4_SORBI	Phospho-2-dehydro-3-deoxyheptonate aldolase. (508 aa)
	C5YLL7_SORBI	Uncharacterized protein. (288 aa)
	C5YYD7_SORBI	Aminotran_1_2 domain-containing protein. (462 aa)
	C5Z371_SORBI	PRAI domain-containing protein. (263 aa)
	C5Z3D1_SORBI	3-phosphoshikimate 1-carboxyvinyltransferase; Belongs to the EPSP synthase family. (506 aa)
	C5Z447_SORBI	Prephenate/arogenate dehydrogenase domain-containing protein. (382 aa)
	C5Z9D2_SORBI	Prephenate/arogenate dehydrogenase domain-containing protein. (389 aa)
	S250_18C08.10	Tryptophan synthase. (476 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YLE2	A0A194YLK4	A0A194YLE2	A0A194YLK4	PALP domain-containing protein.	Prephenate/arogenate dehydrogenase domain-containing protein.	0.451
A0A194YLE2	A0A194YSF0	A0A194YLE2	A0A194YSF0	PALP domain-containing protein.	Uncharacterized protein.	0.450
A0A194YLE2	A0A1B6PD58	A0A194YLE2	A0A1B6PD58	PALP domain-containing protein.	Uncharacterized protein.	0.450
A0A194YLE2	A0A1B6PDJ7	A0A194YLE2	A0A1B6PDJ7	PALP domain-containing protein.	Uncharacterized protein.	0.450
A0A194YLE2	A0A1B6PLE2	A0A194YLE2	A0A1B6PLE2	PALP domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.957
A0A194YLE2	A0A1B6QH50	A0A194YLE2	A0A1B6QH50	PALP domain-containing protein.	Uncharacterized protein.	0.824
A0A194YLE2	A0A1B6QP78	A0A194YLE2	A0A1B6QP78	PALP domain-containing protein.	Uncharacterized protein.	0.824
A0A194YLE2	A0A1B6QQU6	A0A194YLE2	A0A1B6QQU6	PALP domain-containing protein.	Uncharacterized protein.	0.963
A0A194YLE2	A0A1W0W498	A0A194YLE2	A0A1W0W498	PALP domain-containing protein.	IGPS domain-containing protein.	0.991
A0A194YLE2	A0A1Z5RL71	A0A194YLE2	A0A1Z5RL71	PALP domain-containing protein.	Chorismate mutase.	0.443
A0A194YLE2	A0A1Z5S4F7	A0A194YLE2	A0A1Z5S4F7	PALP domain-containing protein.	Uncharacterized protein; Belongs to the TrpA family.	0.997
A0A194YLE2	C5WN01_SORBI	A0A194YLE2	C5WN01	PALP domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.957
A0A194YLE2	C5WQV1_SORBI	A0A194YLE2	C5WQV1	PALP domain-containing protein.	Chorismate synthase.	0.770
A0A194YLE2	C5X6V7_SORBI	A0A194YLE2	C5X6V7	PALP domain-containing protein.	DHQ_synthase domain-containing protein.	0.450
A0A194YLE2	C5XB29_SORBI	A0A194YLE2	C5XB29	PALP domain-containing protein.	Uncharacterized protein; Belongs to the TrpA family.	0.997
A0A194YLE2	C5XKW2_SORBI	A0A194YLE2	C5XKW2	PALP domain-containing protein.	Uncharacterized protein.	0.443
A0A194YLE2	C5XLB0_SORBI	A0A194YLE2	C5XLB0	PALP domain-containing protein.	Uncharacterized protein.	0.450
A0A194YLE2	C5XZK5_SORBI	A0A194YLE2	C5XZK5	PALP domain-containing protein.	PRAI domain-containing protein.	0.958
A0A194YLE2	C5Y092_SORBI	A0A194YLE2	C5Y092	PALP domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.713
A0A194YLE2	C5Y188_SORBI	A0A194YLE2	C5Y188	PALP domain-containing protein.	IGPS domain-containing protein.	0.991

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