(39 nodes) Sphingolipid metabolism network (Sorghum bicolor)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A194YSD9	DAGKc domain-containing protein. (607 aa)
	A0A1B6P7V1	Saposin B-type domain-containing protein. (180 aa)
	A0A1B6P9P7	Glyco_hydro_35 domain-containing protein. (824 aa)
	A0A1B6PEV3	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide. (948 aa)
	A0A1B6PR29	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide. (955 aa)
	A0A1B6PSN4	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (275 aa)
	A0A1B6Q1I0	Uncharacterized protein. (227 aa)
	A0A1B6Q4S3	Neutral ceramidase. (785 aa)
	A0A1B6Q4S6	Neutral ceramidase. (794 aa)
	A0A1B6Q6I5	DAGKc domain-containing protein. (491 aa)
	A0A1B6Q873	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family. (1113 aa)
	A0A1B6QBH2	Alpha-galactosidase. (398 aa)
	A0A1B6QBH8	Alpha-galactosidase. (387 aa)
	A0A1B6QIP7	Uncharacterized protein. (257 aa)
	A0A1B6QKA4	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide. (974 aa)
	SORBI_3K042000	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide. (927 aa)
	A0A1W0W3H0	Alpha-galactosidase. (358 aa)
	A0A1W0W482	Alpha-galactosidase. (399 aa)
	A0A1Z5RIA6	Aminotran_1_2 domain-containing protein. (280 aa)
	A0A1Z5S5S9	Uncharacterized protein. (257 aa)
	C5WQW4_SORBI	Aminotran_1_2 domain-containing protein. (485 aa)
	C5WXC7_SORBI	Alpha-galactosidase. (426 aa)
	C5WXC8_SORBI	Alpha-galactosidase. (409 aa)
	C5X2L9_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (258 aa)
	C5X5L7_SORBI	Alpha-galactosidase. (431 aa)
	C5XBK4_SORBI	DAGKc domain-containing protein. (504 aa)
	C5XFB7_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (273 aa)
	C5XFN1_SORBI	Uncharacterized protein. (533 aa)
	C5XH06_SORBI	Aminotran_1_2 domain-containing protein. (489 aa)
	C5XJ35_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (275 aa)
	C5XS71_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (270 aa)
	C5XS74_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (271 aa)
	C5XS75_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (269 aa)
	C5XYS9_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (258 aa)
	C5Y0D5_SORBI	Uncharacterized protein. (326 aa)
	C5Y2S7_SORBI	Aminotran_1_2 domain-containing protein. (488 aa)
	C5YCK8_SORBI	Sphingolipid delta(4)-desaturase DES1-like; Sphingolipid-delta-4-desaturase required for the biosynthesis of delta-4-unsaturated sphingolipids and derivatives. (325 aa)
	C5YRM9_SORBI	Uncharacterized protein. (247 aa)
	C5Z728_SORBI	Fatty acid hydroxylase domain-containing protein; Belongs to the sterol desaturase family. (263 aa)

Your Current Organism:

Sorghum bicolor

NCBI taxonomy Id: 4558
Other names: Andropogon sorghum, Andropogon sorghum (L.) Brot., S. bicolor, Sorghum bicolor (L.) Moench, Sorghum bicolor subsp. bicolor, Sorghum nervosum, Sorghum nervosum Besser ex Schult., Sorghum saccharatum, Sorghum saccharatum (L.) Moench, Sorghum vulgare, Sorghum vulgare Pers., broomcorn, milo, sorghum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A194YSD9	A0A1B6PEV3	A0A194YSD9	A0A1B6PEV3	DAGKc domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.932
A0A194YSD9	A0A1B6PR29	A0A194YSD9	A0A1B6PR29	DAGKc domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.932
A0A194YSD9	A0A1B6Q4S3	A0A194YSD9	A0A1B6Q4S3	DAGKc domain-containing protein.	Neutral ceramidase.	0.945
A0A194YSD9	A0A1B6Q4S6	A0A194YSD9	A0A1B6Q4S6	DAGKc domain-containing protein.	Neutral ceramidase.	0.945
A0A194YSD9	A0A1B6QIP7	A0A194YSD9	A0A1B6QIP7	DAGKc domain-containing protein.	Uncharacterized protein.	0.611
A0A194YSD9	A0A1B6QKA4	A0A194YSD9	A0A1B6QKA4	DAGKc domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.932
A0A194YSD9	A0A1Z5RIA6	A0A194YSD9	A0A1Z5RIA6	DAGKc domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.431
A0A194YSD9	A0A1Z5S5S9	A0A194YSD9	A0A1Z5S5S9	DAGKc domain-containing protein.	Uncharacterized protein.	0.611
A0A194YSD9	C5WQW4_SORBI	A0A194YSD9	C5WQW4	DAGKc domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.609
A0A194YSD9	C5XFN1_SORBI	A0A194YSD9	C5XFN1	DAGKc domain-containing protein.	Uncharacterized protein.	0.587
A0A194YSD9	C5XH06_SORBI	A0A194YSD9	C5XH06	DAGKc domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.431
A0A194YSD9	C5Y0D5_SORBI	A0A194YSD9	C5Y0D5	DAGKc domain-containing protein.	Uncharacterized protein.	0.616
A0A194YSD9	C5Y2S7_SORBI	A0A194YSD9	C5Y2S7	DAGKc domain-containing protein.	Aminotran_1_2 domain-containing protein.	0.431
A0A194YSD9	C5YCK8_SORBI	A0A194YSD9	C5YCK8	DAGKc domain-containing protein.	Sphingolipid delta(4)-desaturase DES1-like; Sphingolipid-delta-4-desaturase required for the biosynthesis of delta-4-unsaturated sphingolipids and derivatives.	0.936
A0A194YSD9	SORBI_3K042000	A0A194YSD9	A0A1W0VQV1	DAGKc domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.932
A0A1B6P7V1	A0A1B6Q1I0	A0A1B6P7V1	A0A1B6Q1I0	Saposin B-type domain-containing protein.	Uncharacterized protein.	0.905
A0A1B6P7V1	C5YRM9_SORBI	A0A1B6P7V1	C5YRM9	Saposin B-type domain-containing protein.	Uncharacterized protein.	0.904
A0A1B6P9P7	A0A1B6PEV3	A0A1B6P9P7	A0A1B6PEV3	Glyco_hydro_35 domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.900
A0A1B6P9P7	A0A1B6PR29	A0A1B6P9P7	A0A1B6PR29	Glyco_hydro_35 domain-containing protein.	Non-lysosomal glucosylceramidase; Non-lysosomal glucosylceramidase that catalyzes the hydrolysis of glucosylceramide (GlcCer) to free glucose and ceramide.	0.900
A0A1B6P9P7	A0A1B6Q873	A0A1B6P9P7	A0A1B6Q873	Glyco_hydro_35 domain-containing protein.	Bgal_small_N domain-containing protein; Belongs to the glycosyl hydrolase 2 family.	0.925

page 1 of 21

Server load: low (22%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About