STRINGSTRING
B9G98_01337 B9G98_01337 B9G98_01186 B9G98_01186 B9G98_01163 B9G98_01163 B9G98_01109 B9G98_01109 B9G98_01131 B9G98_01131 B9G98_00404 B9G98_00404 B9G98_00408 B9G98_00408 B9G98_00418 B9G98_00418 B9G98_00442 B9G98_00442 B9G98_00454 B9G98_00454 B9G98_00518 B9G98_00518 B9G98_00500 B9G98_00500 B9G98_00534 B9G98_00534 B9G98_00545 B9G98_00545 B9G98_00571 B9G98_00571 B9G98_00693 B9G98_00693 B9G98_00738 B9G98_00738 B9G98_00697 B9G98_00697 B9G98_00699 B9G98_00699 B9G98_00791 B9G98_00791 B9G98_00800 B9G98_00800 B9G98_00863 B9G98_00863 B9G98_00928 B9G98_00928 B9G98_00916 B9G98_00916 B9G98_00987 B9G98_00987 B9G98_00997 B9G98_00997 B9G98_01009 B9G98_01009 B9G98_01116 B9G98_01116 B9G98_01087 B9G98_01087 B9G98_01128 B9G98_01128 PRT1 PRT1 B9G98_04679 B9G98_04679 B9G98_04530 B9G98_04530 B9G98_04462 B9G98_04462 B9G98_04407 B9G98_04407 B9G98_04268 B9G98_04268 B9G98_04247 B9G98_04247 B9G98_04211 B9G98_04211 B9G98_04149 B9G98_04149 B9G98_04155 B9G98_04155 B9G98_04139 B9G98_04139 B9G98_04072 B9G98_04072 B9G98_04068 B9G98_04068 B9G98_04044 B9G98_04044 B9G98_04053 B9G98_04053 B9G98_04018 B9G98_04018 B9G98_03949 B9G98_03949 B9G98_03926 B9G98_03926 B9G98_03852 B9G98_03852 TIF6 TIF6 B9G98_03689 B9G98_03689 B9G98_03570 B9G98_03570 B9G98_03269 B9G98_03269 NIP1 NIP1 B9G98_03119 B9G98_03119 B9G98_03095 B9G98_03095 B9G98_03031 B9G98_03031 B9G98_02972 B9G98_02972 B9G98_02916 B9G98_02916 B9G98_02851 B9G98_02851 B9G98_02748 B9G98_02748 B9G98_02752 B9G98_02752 B9G98_02649 B9G98_02649 B9G98_02652 B9G98_02652 B9G98_02612 B9G98_02612 B9G98_02433 B9G98_02433 B9G98_02249 B9G98_02249 B9G98_02251 B9G98_02251 B9G98_02188 B9G98_02188 B9G98_02037 B9G98_02037 B9G98_02061 B9G98_02061 B9G98_02030 B9G98_02030 B9G98_02028 B9G98_02028 B9G98_01869 B9G98_01869 B9G98_01867 B9G98_01867 B9G98_01743 B9G98_01743 B9G98_01588 B9G98_01588 B9G98_01537 B9G98_01537 B9G98_01563 B9G98_01563 B9G98_01425 B9G98_01425 B9G98_01431 B9G98_01431 B9G98_01367 B9G98_01367 B9G98_00102 B9G98_00102 B9G98_00174 B9G98_00174 B9G98_00145 B9G98_00145 B9G98_00206 B9G98_00206 RPS0 RPS0 TIF32 TIF32 B9G98_00297 B9G98_00297 B9G98_00378 B9G98_00378 B9G98_01392 B9G98_01392 B9G98_01229 B9G98_01229
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B9G98_0133760S acidic ribosomal protein P0; Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules. The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain. The nascent polypeptides leave the ribosome t [...] (311 aa)
B9G98_01186Pre-mRNA-processing factor 39. (422 aa)
B9G98_01163Eukaryotic translation initiation factor 3 subunit D; Belongs to the eIF-3 subunit D family. (525 aa)
B9G98_01109Translation machinery-associated protein 64. (499 aa)
B9G98_01131Eukaryotic translation initiation factor 3 subunit M. (386 aa)
B9G98_00404U4/U6 small nuclear ribonucleoprotein Prp31. (317 aa)
B9G98_00408Uncharacterized protein. (162 aa)
B9G98_00418Survival of motor neuron protein-interacting protein yip12. (221 aa)
B9G98_00442Putative RNA-binding protein sce3. (381 aa)
B9G98_00454Pre-mRNA-splicing factor spp42. (2320 aa)
B9G98_0051837S ribosomal protein S18, mitochondrial. (185 aa)
B9G98_00500Eukaryotic translation initiation factor 2 subunit alpha. (313 aa)
B9G98_00534Uncharacterized protein. (341 aa)
B9G98_00545Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein cdc28. (811 aa)
B9G98_00571DNA topoisomerase 2-associated protein pat1. (861 aa)
B9G98_00693Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4577 aa)
B9G98_00738RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (457 aa)
B9G98_00697U5 small nuclear ribonucleoprotein component CLO. (838 aa)
B9G98_00699Protein MAK11. (360 aa)
B9G98_00791Uncharacterized protein. (172 aa)
B9G98_00800SAGA-associated factor 73. (237 aa)
B9G98_00863WD_REPEATS_REGION domain-containing protein. (432 aa)
B9G98_0092860S ribosomal protein L5. (295 aa)
B9G98_00916Ribosome assembly protein 4. (509 aa)
B9G98_00987SRSF protein kinase 3. (652 aa)
B9G98_0099760S ribosomal protein L6-B. (179 aa)
B9G98_01009Small nuclear ribonucleoprotein F. (93 aa)
B9G98_01116Eukaryotic translation initiation factor 3 subunit I. (327 aa)
B9G98_01087Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16. (889 aa)
B9G98_0112860S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (387 aa)
PRT1Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (731 aa)
B9G98_04679Large subunit GTPase 1. (595 aa)
B9G98_04530Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (232 aa)
B9G98_04462Ribosome biogenesis protein MAK21. (913 aa)
B9G98_04407Pre-rRNA-processing protein ESF2. (256 aa)
B9G98_04268Eukaryotic translation initiation factor 3 subunit J. (240 aa)
B9G98_04247Pre-mRNA-splicing factor CLF1. (647 aa)
B9G98_04211Ribosome assembly protein SQT1. (417 aa)
B9G98_04149H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (324 aa)
B9G98_04155Serine/threonine-protein kinase KIN28; Belongs to the protein kinase superfamily. (304 aa)
B9G98_04139Pre-mRNA-splicing factor cwf16. (186 aa)
B9G98_04072RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (450 aa)
B9G98_04068Eukaryotic translation initiation factor 2 subunit beta. (260 aa)
B9G98_04044Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (633 aa)
B9G98_0405340S ribosomal protein S27. (82 aa)
B9G98_04018RNA exonuclease 4. (266 aa)
B9G98_03949DNA-directed RNA polymerase II subunit rpb4. (175 aa)
B9G98_03926Nucleolar protein 13. (302 aa)
B9G98_03852Eukaryotic translation initiation factor 3 subunit E; Belongs to the eIF-3 subunit E family. (370 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (239 aa)
B9G98_03689Eukaryotic translation initiation factor 5. (400 aa)
B9G98_03570Protein kintoun. (180 aa)
B9G98_03269Eukaryotic translation initiation factor 1A; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (150 aa)
NIP1Eukaryotic translation initiation factor 3 subunit C; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (811 aa)
B9G98_03119Protein HIT1. (131 aa)
B9G98_03095Pre-mRNA-processing factor 39. (332 aa)
B9G98_03031Pre-mRNA-splicing factor brr2. (1857 aa)
B9G98_02972C3H1-type domain-containing protein. (174 aa)
B9G98_02916rRNA biogenesis protein rrp5. (1586 aa)
B9G98_02851Cell division control protein 73. (383 aa)
B9G98_02748RNA-binding motif protein, X-linked 2. (131 aa)
B9G98_02752Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (145 aa)
B9G98_02649Uncharacterized protein. (738 aa)
B9G98_02652Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (381 aa)
B9G98_02612Eukaryotic translation initiation factor 3 subunit H; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (321 aa)
B9G98_02433U2 snRNP component prp10. (922 aa)
B9G98_02249ATP-dependent RNA helicase MRH4, mitochondrial. (491 aa)
B9G98_0225160S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (181 aa)
B9G98_0218860S ribosomal protein L10. (219 aa)
B9G98_02037Pre-mRNA-splicing factor sap61. (420 aa)
B9G98_02061SAM_MT_RSMB_NOP domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (582 aa)
B9G98_02030Histidine protein methyltransferase 1. (292 aa)
B9G98_02028Pre-mRNA-splicing factor ATP-dependent RNA helicase prp22. (965 aa)
B9G98_01869Ribosome biogenesis protein SSF2. (398 aa)
B9G98_01867Pre-mRNA-splicing factor cwf2. (265 aa)
B9G98_01743Eukaryotic translation initiation factor 2 subunit gamma. (514 aa)
B9G98_0158840S ribosomal protein S19-A. (147 aa)
B9G98_01537Eukaryotic translation initiation factor 5B. (1008 aa)
B9G98_01563Eukaryotic translation initiation factor 3 subunit G. (236 aa)
B9G98_01425Plus3 domain-containing protein. (533 aa)
B9G98_0143160S ribosomal protein L25-B; Belongs to the universal ribosomal protein uL23 family. (144 aa)
B9G98_01367Pre-mRNA-splicing factor sap62. (214 aa)
B9G98_00102Ribosome assembly protein 3. (136 aa)
B9G98_00174DNA polymerase V. (945 aa)
B9G98_00145Protein shq1. (419 aa)
B9G98_00206Uncharacterized protein. (198 aa)
RPS040S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (261 aa)
TIF32Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. (965 aa)
B9G98_00297GST N-terminal domain-containing protein. (268 aa)
B9G98_00378Ribosomal RNA-processing protein 7. (234 aa)
B9G98_01392Ribosome biogenesis protein RPF2. (316 aa)
B9G98_01229Ribosome biogenesis protein BRX1. (281 aa)
Your Current Organism:
Wickerhamiella sorbophila
NCBI taxonomy Id: 45607
Other names: AJ 4995, ATCC 60130, CBS 6739, CCRC 22618, CCRC:22618, Candida sorbophila, NRRL Y-7921, Torulopsis sorbophila, W. sorbophila
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